Serialized Form (Mallet 2 API)

Package cc.mallet.classify
- Class cc.mallet.classify.AdaBoost extends Classifier implements Serializable
  - Serialized Fields
    - alphas
      
      double[] alphas
    - weakClassifiers
      
      Classifier[] weakClassifiers
- Class cc.mallet.classify.AdaBoostM2 extends Classifier implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - alphas
      
      double[] alphas
    - weakClassifiers
      
      Classifier[] weakClassifiers
- Class cc.mallet.classify.BaggingClassifier extends Classifier implements Serializable
  - Serialized Fields
    - baggedClassifiers
      
      Classifier[] baggedClassifiers
    - weights
      
      double[] weights
- Class cc.mallet.classify.BalancedWinnow extends Classifier implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - m_weights
      
      double[][] m_weights
- Class cc.mallet.classify.BalancedWinnowTrainer extends ClassifierTrainer<BalancedWinnow> implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - classifier
      
      BalancedWinnow classifier
    - m_coolingRate
      
      double m_coolingRate
    - m_delta
      
      double m_delta
    - m_epsilon
      
      double m_epsilon
    - m_maxIterations
      
      int m_maxIterations
    - m_weights
      
      double[][] m_weights
      
      Array of weights, one for each class and feature, initialized to 1. For each class, there is an additional default "feature" weight that is set to 1 in every example (it remains constant; this is used to prevent the instance from having 0 dot product with a class).
- Class cc.mallet.classify.C45 extends Classifier implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - m_root
      
      C45.Node m_root
- Class cc.mallet.classify.C45.Node extends java.lang.Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - m_dataDict
      
      Alphabet m_dataDict
    - m_gainRatio
      
      GainRatio m_gainRatio
    - m_ilist
      
      InstanceList m_ilist
    - m_instIndices
      
      int[] m_instIndices
    - m_leftChild
      
      C45.Node m_leftChild
    - m_minNumInsts
      
      int m_minNumInsts
    - m_parent
      
      C45.Node m_parent
    - m_rightChild
      
      C45.Node m_rightChild
- Class cc.mallet.classify.Classification extends java.lang.Object implements Serializable
  - Serialized Fields
    - classifier
      
      Classifier classifier
    - instance
      
      Instance instance
    - labeling
      
      Labeling labeling
- Class cc.mallet.classify.Classifier extends java.lang.Object implements Serializable
  - Serialized Fields
    - instancePipe
      
      Pipe instancePipe
- Class cc.mallet.classify.ClassifierEnsemble extends Classifier implements Serializable
  - Serialized Fields
    - ensemble
      
      Classifier[] ensemble
    - weights
      
      double[] weights
- Class cc.mallet.classify.ConfidencePredictingClassifier extends Classifier implements Serializable
  - Serialized Fields
    - confidencePredictingClassifier
      
      Classifier confidencePredictingClassifier
    - numConfidenceCorrect
      
      int numConfidenceCorrect
    - numCorrectInstances
      
      int numCorrectInstances
    - numFalseNegative
      
      int numFalseNegative
    - numFalsePositive
      
      int numFalsePositive
    - numIncorrectInstances
      
      int numIncorrectInstances
    - totalCorrect
      
      double totalCorrect
    - totalIncorrect
      
      double totalIncorrect
    - totalIncorrectCorrect
      
      double totalIncorrectCorrect
    - totalIncorrectIncorrect
      
      double totalIncorrectIncorrect
    - underlyingClassifier
      
      Classifier underlyingClassifier
- Class cc.mallet.classify.DecisionTree extends Classifier implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - addFeaturesClassEntropyThreshold
      
      double addFeaturesClassEntropyThreshold
    - root
      
      DecisionTree.Node root
- Class cc.mallet.classify.DecisionTree.Node extends java.lang.Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - child0
      
      DecisionTree.Node child0
    - child1
      
      DecisionTree.Node child1
    - dictionary
      
      Alphabet dictionary
    - featureIndex
      
      int featureIndex
    - ilist
      
      InstanceList ilist
    - infoGain
      
      double infoGain
    - labelEntropy
      
      double labelEntropy
    - labeling
      
      Labeling labeling
    - name
      
      java.lang.String name
    - parent
      
      DecisionTree.Node parent
- Class cc.mallet.classify.MaxEnt extends Classifier implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - defaultFeatureIndex
      
      int defaultFeatureIndex
    - featureSelection
      
      FeatureSelection featureSelection
    - parameters
      
      double[] parameters
    - perClassFeatureSelection
      
      FeatureSelection[] perClassFeatureSelection
- Class cc.mallet.classify.MaxEntGERangeTrainer extends ClassifierTrainer<MaxEnt> implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - classifier
      
      MaxEnt classifier
    - constraints
      
      java.util.ArrayList<MaxEntGEConstraint> constraints
    - constraintsFile
      
      java.lang.String constraintsFile
    - gaussianPriorVariance
      
      double gaussianPriorVariance
    - ge
      
      MaxEntOptimizableByGE ge
    - maxIterations
      
      int maxIterations
    - normalize
      
      boolean normalize
    - numIterations
      
      int numIterations
    - opt
      
      Optimizer opt
    - temperature
      
      double temperature
    - trainingList
      
      InstanceList trainingList
    - useValues
      
      boolean useValues
- Class cc.mallet.classify.MaxEntGETrainer extends ClassifierTrainer<MaxEnt> implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - classifier
      
      MaxEnt classifier
    - constraints
      
      java.util.ArrayList<MaxEntGEConstraint> constraints
    - constraintsFile
      
      java.lang.String constraintsFile
    - gaussianPriorVariance
      
      double gaussianPriorVariance
    - ge
      
      MaxEntOptimizableByGE ge
    - l2
      
      boolean l2
    - maxIterations
      
      int maxIterations
    - normalize
      
      boolean normalize
    - numIterations
      
      int numIterations
    - opt
      
      Optimizer opt
    - temperature
      
      double temperature
    - trainingList
      
      InstanceList trainingList
    - useValues
      
      boolean useValues
- Class cc.mallet.classify.MaxEntL1Trainer extends MaxEntTrainer implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - l1Weight
      
      double l1Weight
- Class cc.mallet.classify.MaxEntTrainer extends ClassifierTrainer<MaxEnt> implements Serializable
  - Serialized Fields
    - gaussianPriorVariance
      
      double gaussianPriorVariance
    - initialClassifier
      
      MaxEnt initialClassifier
    - l1Weight
      
      double l1Weight
    - maximizerClass
      
      java.lang.Class maximizerClass
    - numIterations
      
      int numIterations
    - optimizable
      
      MaxEntOptimizableByLabelLikelihood optimizable
    - optimizer
      
      Optimizer optimizer
    - trainingSet
      
      InstanceList trainingSet
- Class cc.mallet.classify.MCMaxEnt extends Classifier implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - defaultFeatureIndex
      
      int defaultFeatureIndex
    - featureSelection
      
      FeatureSelection featureSelection
    - parameters
      
      double[] parameters
    - perClassFeatureSelection
      
      FeatureSelection[] perClassFeatureSelection
- Class cc.mallet.classify.MCMaxEntTrainer extends ClassifierTrainer<MCMaxEnt> implements Serializable
  - Serialized Fields
    - gaussianPriorVariance
      
      double gaussianPriorVariance
    - generativeWeighting
      
      double generativeWeighting
    - hyperbolicPriorSharpness
      
      double hyperbolicPriorSharpness
    - hyperbolicPriorSlope
      
      double hyperbolicPriorSlope
    - initialClassifier
      
      MCMaxEnt initialClassifier
    - maximizerClass
      
      java.lang.Class maximizerClass
    - mt
      
      cc.mallet.classify.MCMaxEntTrainer.MaximizableTrainer mt
    - numGetValueCalls
      
      int numGetValueCalls
    - numGetValueGradientCalls
      
      int numGetValueGradientCalls
    - numIterations
      
      int numIterations
    - usingHyperbolicPrior
      
      boolean usingHyperbolicPrior
    - usingMultiConditionalTraining
      
      boolean usingMultiConditionalTraining
- Class cc.mallet.classify.MostFrequentClassifier extends Classifier implements Serializable
  
  serialVersionUID:
  
  -2685212760735255652L
  - Serialized Fields
    - labels
      
      java.util.HashMap<java.lang.String,Label> labels
    - sortedLabelMap
      
      java.util.TreeMap<java.lang.String,java.lang.Integer> sortedLabelMap
- Class cc.mallet.classify.NaiveBayes extends Classifier implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - p
      
      Multinomial.Logged[] p
    - prior
      
      Multinomial.Logged prior
- Class cc.mallet.classify.NaiveBayesTrainer extends ClassifierTrainer<NaiveBayes> implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - classifier
      
      NaiveBayes classifier
    - dataAlphabet
      
      Alphabet dataAlphabet
    - docLengthNormalization
      
      double docLengthNormalization
    - featureEstimator
      
      Multinomial.Estimator featureEstimator
    - instancePipe
      
      Pipe instancePipe
    - me
      
      Multinomial.Estimator[] me
    - pe
      
      Multinomial.Estimator pe
    - priorEstimator
      
      Multinomial.Estimator priorEstimator
    - targetAlphabet
      
      Alphabet targetAlphabet
- Class cc.mallet.classify.PRAuxClassifier extends Classifier implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - constraints
      
      java.util.ArrayList<MaxEntPRConstraint> constraints
    - numLabels
      
      int numLabels
    - parameters
      
      double[][] parameters
- Class cc.mallet.classify.RandomClassifier extends Classifier implements Serializable
  
  serialVersionUID:
  
  3689741912639283481L
  - Serialized Fields
    - labels
      
      java.util.List<Label> labels
- Class cc.mallet.classify.RankMaxEnt extends MaxEnt implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
- Class cc.mallet.classify.RankMaxEntTrainer extends MaxEntTrainer implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
- Class cc.mallet.classify.Trial extends java.util.ArrayList<Classification> implements Serializable
  - Serialized Fields
    - classifier
      
      Classifier classifier
- Class cc.mallet.classify.Winnow extends Classifier implements Serializable
  - Serialized Fields
    - theta
      
      double theta
      
      threshold for sum of wi*xi in formulating guess
    - weights
      
      double[][] weights
      
      array of weights, one for each feature, initialized to 1
Package cc.mallet.classify.evaluate
- Class cc.mallet.classify.evaluate.Graph extends java.awt.Canvas implements Serializable
  - Serialized Fields
    - bottom
      
      int bottom
    - fm
      
      java.awt.FontMetrics fm
    - items
      
      java.util.Vector items
    - labelWidth
      
      int labelWidth
    - left
      
      int left
    - legend
      
      Graph.Legend legend
    - max
      
      int max
    - min
      
      int min
    - padding
      
      int padding
    - right
      
      int right
    - title
      
      java.lang.String title
    - titleHeight
      
      int titleHeight
    - top
      
      int top
    - xLabel
      
      java.lang.String xLabel
    - xLabelHeight
      
      int xLabelHeight
    - xmax
      
      int xmax
    - xmin
      
      int xmin
    - yLabel
      
      java.lang.String yLabel
    - yLabelWidth
      
      int yLabelWidth
- Class cc.mallet.classify.evaluate.Graph2 extends Graph implements Serializable
  - Serialized Fields
    - increment
      
      int increment
    - position
      
      int position
Package cc.mallet.cluster
- Class cc.mallet.cluster.Clusterer extends java.lang.Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - instancePipe
      
      Pipe instancePipe
- Class cc.mallet.cluster.Clustering extends java.lang.Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - instances
      
      InstanceList instances
    - labels
      
      int[] labels
    - numLabels
      
      int numLabels
- Class cc.mallet.cluster.Clusterings extends java.lang.Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - clusterings
      
      Clustering[] clusterings
- Class cc.mallet.cluster.GreedyAgglomerative extends HillClimbingClusterer implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - converged
      
      boolean converged
      
      True if should stop clustering.
    - scoreCache
      
      PairwiseMatrix scoreCache
      
      Cache for calls to NeighborhoodEvaluator. In some experiments, reduced running time by nearly half.
    - stoppingThreshold
      
      double stoppingThreshold
      
      Converged when merge score is below this value.
- Class cc.mallet.cluster.GreedyAgglomerativeByDensity extends GreedyAgglomerative implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - doPostConvergenceMerges
      
      boolean doPostConvergenceMerges
      
      If true, perform greedy agglomerative clustering on the clusters at the end of convergence. This may alleviate the greediness of the byDensity clustering algorithm.
    - instanceBeingClustered
      
      int instanceBeingClustered
      
      Index of an Instance in the cluster currently being created.
    - random
      
      java.util.Random random
      
      Randomness to order instanceBeingClustered.
    - unclusteredInstances
      
      com.carrotsearch.hppc.IntArrayList unclusteredInstances
      
      Integers representing the Instance indices that have not yet been placed in a cluster.
- Class cc.mallet.cluster.HillClimbingClusterer extends KBestClusterer implements Serializable
  - Serialized Fields
    - evaluator
      
      NeighborEvaluator evaluator
- Class cc.mallet.cluster.KBestClusterer extends Clusterer implements Serializable
- Class cc.mallet.cluster.KMeans extends Clusterer implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - clusterMeans
      
      java.util.ArrayList<SparseVector> clusterMeans
    - emptyAction
      
      int emptyAction
    - metric
      
      Metric metric
    - numClusters
      
      int numClusters
    - randinator
      
      java.util.Random randinator
- Class cc.mallet.cluster.Record extends java.lang.Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - field2values
      
      com.carrotsearch.hppc.IntObjectHashMap<FeatureVector> field2values
    - fieldAlph
      
      Alphabet fieldAlph
    - valueAlph
      
      Alphabet valueAlph
Package cc.mallet.cluster.neighbor_evaluator
- Class cc.mallet.cluster.neighbor_evaluator.AgglomerativeNeighbor extends Neighbor implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - newCluster
      
      int[] newCluster
      
      Instance indices in the new, merged cluster.
    - oldClusters
      
      int[][] oldClusters
      
      Instance indices in the old, pre-merged clusters.
- Class cc.mallet.cluster.neighbor_evaluator.ClassifyingNeighborEvaluator extends java.lang.Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - classifier
      
      Classifier classifier
      
      The Classifier used to assign a score to each Neighbor.
    - scoringLabel
      
      java.lang.String scoringLabel
      
      The label corresponding to a positive instance (e.g. "YES").
- Class cc.mallet.cluster.neighbor_evaluator.MedoidEvaluator extends ClassifyingNeighborEvaluator implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - combiningStrategy
      
      MedoidEvaluator.CombiningStrategy combiningStrategy
      
      How to combine a set of pairwise scores (e.g. mean, max, ...)... [currently not supported in this class]
    - mergeFirst
      
      boolean mergeFirst
      
      If true, score all edges involved in a merge. If false, only score the edges that croess the boundaries of the clusters being merged.
    - scoreCache
      
      PairwiseMatrix scoreCache
      
      Cache for calls to getScore. In some experiments, reduced running time by nearly half.
    - singleLink
      
      boolean singleLink
      
      If single link is true, then the score of clusters A and B is the score of the link between the two medoids.
- Class cc.mallet.cluster.neighbor_evaluator.Neighbor extends java.lang.Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - alphabet
      
      Alphabet alphabet
    - modified
      
      Clustering modified
    - original
      
      Clustering original
- Class cc.mallet.cluster.neighbor_evaluator.PairwiseEvaluator extends ClassifyingNeighborEvaluator implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - combiningStrategy
      
      PairwiseEvaluator.CombiningStrategy combiningStrategy
      
      How to combine a set of pairwise scores (e.g. mean, max, ...).
    - mergeFirst
      
      boolean mergeFirst
      
      If true, score all edges involved in a merge. If false, only score the edges that croess the boundaries of the clusters being merged.
    - scoreCache
      
      PairwiseMatrix scoreCache
      
      Cache for calls to getScore. In some experiments, reduced running time by nearly half.
- Class cc.mallet.cluster.neighbor_evaluator.PairwiseEvaluator.Average extends java.lang.Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
- Class cc.mallet.cluster.neighbor_evaluator.PairwiseEvaluator.Maximum extends java.lang.Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
- Class cc.mallet.cluster.neighbor_evaluator.PairwiseEvaluator.Minimum extends java.lang.Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
- Class cc.mallet.cluster.neighbor_evaluator.RandomEvaluator extends java.lang.Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - random
      
      Randoms random
- Class cc.mallet.cluster.neighbor_evaluator.RankingNeighborEvaluator extends ClassifyingNeighborEvaluator implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
Package cc.mallet.cluster.tui
- Class cc.mallet.cluster.tui.Clusterings2Clusterer.ClusteringPipe extends Pipe implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - approxMatchFields
      
      int[] approxMatchFields
    - approxMatchThreshold
      
      double approxMatchThreshold
    - exactMatchFields
      
      int[] exactMatchFields
    - substringMatchFields
      
      int[] substringMatchFields
Package cc.mallet.cluster.util
- Class cc.mallet.cluster.util.PairwiseMatrix extends java.lang.Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - vals
      
      double[][] vals

Package cc.mallet.extract

Class cc.mallet.extract.BIOTokenizationFilter extends java.lang.Object implements Serializable

serialVersionUID:: -8726127297313150023L

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream in)
                 throws java.io.IOException,
                        java.lang.ClassNotFoundException

Throws:: java.io.IOException; java.lang.ClassNotFoundException

writeObject

private void writeObject(java.io.ObjectOutputStream out)
                  throws java.io.IOException

Throws:: java.io.IOException

Class cc.mallet.extract.BIOTokenizationFilterWithTokenIndices extends BIOTokenizationFilter implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream in)
                 throws java.io.IOException,
                        java.lang.ClassNotFoundException

Throws:: java.io.IOException; java.lang.ClassNotFoundException

writeObject

private void writeObject(java.io.ObjectOutputStream out)
                  throws java.io.IOException

Throws:: java.io.IOException

Class cc.mallet.extract.ConfidenceTokenizationFilter extends java.lang.Object implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream in)
                 throws java.io.IOException,
                        java.lang.ClassNotFoundException

Throws:: java.io.IOException; java.lang.ClassNotFoundException

writeObject

private void writeObject(java.io.ObjectOutputStream out)
                  throws java.io.IOException

Throws:: java.io.IOException

Serialized Fields

confidenceEstimator

ExtractionConfidenceEstimator confidenceEstimator

underlyingFilter
```
TokenizationFilter underlyingFilter
```

Class cc.mallet.extract.CRFExtractor extends java.lang.Object implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream in)
                 throws java.io.IOException,
                        java.lang.ClassNotFoundException

Throws:: java.io.IOException; java.lang.ClassNotFoundException

writeObject

private void writeObject(java.io.ObjectOutputStream out)
                  throws java.io.IOException

Throws:: java.io.IOException

Serialized Fields

backgroundTag
```
java.lang.String backgroundTag
```
crf
```
CRF crf
```
featurePipe
```
Pipe featurePipe
```
filter
```
TokenizationFilter filter
```
tokenizationPipe
```
Pipe tokenizationPipe
```

Class cc.mallet.extract.DefaultTokenizationFilter extends java.lang.Object implements Serializable

Class cc.mallet.extract.DocumentExtraction extends java.lang.Object implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream in)
                 throws java.io.IOException,
                        java.lang.ClassNotFoundException

Throws:: java.io.IOException; java.lang.ClassNotFoundException

writeObject

private void writeObject(java.io.ObjectOutputStream out)
                  throws java.io.IOException

Throws:: java.io.IOException

Serialized Fields

backgroundTag
```
Label backgroundTag
```
document
```
java.lang.Object document
```
extractedSpans
```
LabeledSpans extractedSpans
```
input
```
Tokenization input
```
name
```
java.lang.String name
```
predictedLabels
```
Sequence predictedLabels
```
target
```
LabelSequence target
```
targetSpans
```
LabeledSpans targetSpans
```

Class cc.mallet.extract.LabeledSpan extends java.lang.Object implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream in)
                 throws java.io.IOException,
                        java.lang.ClassNotFoundException

Throws:: java.io.IOException; java.lang.ClassNotFoundException

writeObject

private void writeObject(java.io.ObjectOutputStream out)
                  throws java.io.IOException

Throws:: java.io.IOException

Serialized Fields

confidence
```
double confidence
```
isBackground
```
boolean isBackground
```
label
```
Label label
```
span
```
Span span
```

Class cc.mallet.extract.LabeledSpans extends ArrayListSequence implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream in)
                 throws java.io.IOException,
                        java.lang.ClassNotFoundException

Throws:: java.io.IOException; java.lang.ClassNotFoundException

writeObject

private void writeObject(java.io.ObjectOutputStream out)
                  throws java.io.IOException

Throws:: java.io.IOException

Serialized Fields
- document
```
java.lang.Object document
```

Class cc.mallet.extract.StringSpan extends Token implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream in)
                 throws java.io.IOException,
                        java.lang.ClassNotFoundException

Throws:: java.io.IOException; java.lang.ClassNotFoundException

writeObject

private void writeObject(java.io.ObjectOutputStream out)
                  throws java.io.IOException

Throws:: java.io.IOException

Serialized Fields

document
```
java.lang.CharSequence document
```
end
```
int end
```
start
```
int start
```

Class cc.mallet.extract.StringTokenization extends TokenSequence implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream in)
                 throws java.io.IOException,
                        java.lang.ClassNotFoundException

Throws:: java.io.IOException; java.lang.ClassNotFoundException

writeObject

private void writeObject(java.io.ObjectOutputStream out)
                  throws java.io.IOException

Throws:: java.io.IOException

Serialized Fields
- document
```
java.lang.CharSequence document
```

Class cc.mallet.extract.TransducerExtractionConfidenceEstimator extends ExtractionConfidenceEstimator implements Serializable
- Serialized Fields
  - confidenceEstimator
```
TransducerConfidenceEstimator confidenceEstimator
```
  - featurePipe
```
Pipe featurePipe
```

Package cc.mallet.extract.pipe
- Class cc.mallet.extract.pipe.TokenSequence2Tokenization extends Pipe implements Serializable

Package cc.mallet.fst

Class cc.mallet.fst.CRF extends Transducer implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream in)
                 throws java.io.IOException,
                        java.lang.ClassNotFoundException

Throws:: java.io.IOException; java.lang.ClassNotFoundException

writeObject

private void writeObject(java.io.ObjectOutputStream out)
                  throws java.io.IOException

Throws:: java.io.IOException

Serialized Fields

cachedNumParametersStamp
```
int cachedNumParametersStamp
```

featureInducers

java.util.ArrayList<FeatureInducer> featureInducers

featureSelections
```
FeatureSelection[] featureSelections
```
globalFeatureSelection
```
FeatureSelection globalFeatureSelection
```

initialStates

java.util.ArrayList<CRF.State> initialStates

inputAlphabet
```
Alphabet inputAlphabet
```

name2state

java.util.HashMap<java.lang.String,CRF.State> name2state

numParameters
```
int numParameters
```
outputAlphabet
```
Alphabet outputAlphabet
```
parameters
```
CRF.Factors parameters
```
states
```
java.util.ArrayList<CRF.State> states
```
weightsStructureChangeStamp
```
int weightsStructureChangeStamp
```
weightsValueChangeStamp
```
int weightsValueChangeStamp
```

Class cc.mallet.fst.CRF.Factors extends java.lang.Object implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream in)
                 throws java.io.IOException,
                        java.lang.ClassNotFoundException

Throws:: java.io.IOException; java.lang.ClassNotFoundException

writeObject

private void writeObject(java.io.ObjectOutputStream out)
                  throws java.io.IOException

Throws:: java.io.IOException

Serialized Fields

defaultWeights
```
double[] defaultWeights
```
finalWeights
```
double[] finalWeights
```
initialWeights
```
double[] initialWeights
```
weightAlphabet
```
Alphabet weightAlphabet
```
weights
```
SparseVector[] weights
```
weightsFrozen
```
boolean[] weightsFrozen
```

Class cc.mallet.fst.CRF.State extends Transducer.State implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream in)
                 throws java.io.IOException,
                        java.lang.ClassNotFoundException

Throws:: java.io.IOException; java.lang.ClassNotFoundException

writeObject

private void writeObject(java.io.ObjectOutputStream out)
                  throws java.io.IOException

Throws:: java.io.IOException

Serialized Fields

crf
```
CRF crf
```
destinationNames
```
java.lang.String[] destinationNames
```
destinations
```
CRF.State[] destinations
```
index
```
int index
```
labels
```
java.lang.String[] labels
```
name
```
java.lang.String name
```
weightsIndices
```
int[][] weightsIndices
```

Class cc.mallet.fst.CRF.TransitionIterator extends Transducer.TransitionIterator implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream in)
                 throws java.io.IOException,
                        java.lang.ClassNotFoundException

Throws:: java.io.IOException; java.lang.ClassNotFoundException

writeObject

private void writeObject(java.io.ObjectOutputStream out)
                  throws java.io.IOException

Throws:: java.io.IOException

Serialized Fields

crf
```
CRF crf
```
index
```
int index
```
input
```
FeatureVector input
```
nextIndex
```
int nextIndex
```
source
```
CRF.State source
```
weights
```
double[] weights
```

Class cc.mallet.fst.CRFOptimizableByBatchLabelLikelihood extends java.lang.Object implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream in)
                 throws java.io.IOException,
                        java.lang.ClassNotFoundException

Throws:: java.io.IOException; java.lang.ClassNotFoundException

writeObject

private void writeObject(java.io.ObjectOutputStream out)
                  throws java.io.IOException

Throws:: java.io.IOException

Serialized Fields

cachedGradient
```
java.util.List<double[]> cachedGradient
```
cachedValue
```
double[] cachedValue
```
constraints
```
CRF.Factors constraints
```
crf
```
CRF crf
```

expectations

java.util.List<CRF.Factors> expectations

gaussianPriorVariance
```
double gaussianPriorVariance
```
hyperbolicPriorSharpness
```
double hyperbolicPriorSharpness
```
hyperbolicPriorSlope
```
double hyperbolicPriorSlope
```
numBatches
```
int numBatches
```
trainingSet
```
InstanceList trainingSet
```
usingHyperbolicPrior
```
boolean usingHyperbolicPrior
```

Class cc.mallet.fst.CRFOptimizableByLabelLikelihood extends java.lang.Object implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream in)
                 throws java.io.IOException,
                        java.lang.ClassNotFoundException

Throws:: java.io.IOException; java.lang.ClassNotFoundException

writeObject

private void writeObject(java.io.ObjectOutputStream out)
                  throws java.io.IOException

Throws:: java.io.IOException

Serialized Fields

cachedGradient
```
double[] cachedGradient
```
cachedGradientWeightsStamp
```
int cachedGradientWeightsStamp
```
cachedValue
```
double cachedValue
```
cachedValueWeightsStamp
```
int cachedValueWeightsStamp
```
constraints
```
CRF.Factors constraints
```
crf
```
CRF crf
```
expectations
```
CRF.Factors expectations
```
gaussianPriorVariance
```
double gaussianPriorVariance
```
hyperbolicPriorSharpness
```
double hyperbolicPriorSharpness
```
hyperbolicPriorSlope
```
double hyperbolicPriorSlope
```
infiniteValues
```
java.util.BitSet infiniteValues
```
trainingSet
```
InstanceList trainingSet
```
usingHyperbolicPrior
```
boolean usingHyperbolicPrior
```

Class cc.mallet.fst.CRFTrainerByValueGradients.OptimizableCRF extends java.lang.Object implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream in)
                 throws java.io.IOException,
                        java.lang.ClassNotFoundException

Throws:: java.io.IOException; java.lang.ClassNotFoundException

writeObject

private void writeObject(java.io.ObjectOutputStream out)
                  throws java.io.IOException

Throws:: java.io.IOException

Serialized Fields

cachedGradie
```
double[] cachedGradie
```
cachedValue
```
double cachedValue
```
crf
```
CRF crf
```
infiniteValues
```
java.util.BitSet infiniteValues
```
opts
```
Optimizable.ByGradientValue[] opts
```
trainingSet
```
InstanceList trainingSet
```

Class cc.mallet.fst.FeatureTransducer extends Transducer implements Serializable

serialVersionUID:: 1L

Serialized Fields

finalStateCounts
```
Multinomial.Estimator finalStateCounts
```

initialStateCounts

Multinomial.Estimator initialStateCounts

initialStates

java.util.ArrayList<FeatureTransducer.State> initialStates

inputAlphabet
```
Alphabet inputAlphabet
```

name2state

java.util.HashMap<java.lang.String,FeatureTransducer.State> name2state

outputAlphabet
```
Alphabet outputAlphabet
```

states

java.util.ArrayList<FeatureTransducer.State> states

trainable
```
boolean trainable
```

Class cc.mallet.fst.FeatureTransducer.State extends Transducer.State implements Serializable

serialVersionUID:: 1L

Serialized Fields

finalWeight
```
double finalWeight
```
index
```
int index
```
initialWeight
```
double initialWeight
```

input2transitions

com.carrotsearch.hppc.IntObjectHashMap input2transitions

name
```
java.lang.String name
```
transducer
```
FeatureTransducer transducer
```
transitionCounts
```
Multinomial.Estimator transitionCounts
```

transitions

FeatureTransducer.Transition[] transitions

Class cc.mallet.fst.FeatureTransducer.TransitionIterator extends Transducer.TransitionIterator implements Serializable
- Serialized Fields
  - index
```
int index
```
  - input
```
int input
```
  - source
```
FeatureTransducer.State source
```
  - transition
```
FeatureTransducer.Transition transition
```

Class cc.mallet.fst.HMM extends Transducer implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream in)
                 throws java.io.IOException,
                        java.lang.ClassNotFoundException

Throws:: java.io.IOException; java.lang.ClassNotFoundException

writeObject

private void writeObject(java.io.ObjectOutputStream out)
                  throws java.io.IOException

Throws:: java.io.IOException

Serialized Fields

emissionEstimator

Multinomial.Estimator[] emissionEstimator

emissionMultinomial
```
Multinomial[] emissionMultinomial
```
initialEstimator
```
Multinomial.Estimator initialEstimator
```
initialMultinomial
```
Multinomial initialMultinomial
```

initialStates

java.util.ArrayList<HMM.State> initialStates

inputAlphabet
```
Alphabet inputAlphabet
```

name2state

java.util.HashMap<java.lang.String,HMM.State> name2state

outputAlphabet
```
Alphabet outputAlphabet
```
states
```
java.util.ArrayList<HMM.State> states
```

transitionEstimator

Multinomial.Estimator[] transitionEstimator

transitionMultinomial
```
Multinomial[] transitionMultinomial
```

Class cc.mallet.fst.HMM.State extends Transducer.State implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream in)
                 throws java.io.IOException,
                        java.lang.ClassNotFoundException

Throws:: java.io.IOException; java.lang.ClassNotFoundException

writeObject

private void writeObject(java.io.ObjectOutputStream out)
                  throws java.io.IOException

Throws:: java.io.IOException

Serialized Fields

destinationNames
```
java.lang.String[] destinationNames
```
destinations
```
HMM.State[] destinations
```
finalWeight
```
double finalWeight
```
hmm
```
HMM hmm
```
index
```
int index
```
initialWeight
```
double initialWeight
```
labels
```
java.lang.String[] labels
```
name
```
java.lang.String name
```

Class cc.mallet.fst.HMM.TransitionIterator extends Transducer.TransitionIterator implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream in)
                 throws java.io.IOException,
                        java.lang.ClassNotFoundException

Throws:: java.io.IOException; java.lang.ClassNotFoundException

writeObject

private void writeObject(java.io.ObjectOutputStream out)
                  throws java.io.IOException

Throws:: java.io.IOException

Serialized Fields

hmm
```
HMM hmm
```
index
```
int index
```
inputFeature
```
java.lang.Integer inputFeature
```
inputPos
```
int inputPos
```
inputSequence
```
FeatureSequence inputSequence
```
nextIndex
```
int nextIndex
```
source
```
HMM.State source
```
weights
```
double[] weights
```

Class cc.mallet.fst.MaxLatticeDefault.Factory extends MaxLatticeFactory implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream in)
                 throws java.io.IOException,
                        java.lang.ClassNotFoundException

Throws:: java.io.IOException; java.lang.ClassNotFoundException

writeObject

private void writeObject(java.io.ObjectOutputStream out)
                  throws java.io.IOException

Throws:: java.io.IOException

Class cc.mallet.fst.MaxLatticeFactory extends java.lang.Object implements Serializable
Class cc.mallet.fst.MEMM extends CRF implements Serializable
Class cc.mallet.fst.MEMM.State extends CRF.State implements Serializable
- Serialized Fields
  - trainingSet
```
InstanceList trainingSet
```
Class cc.mallet.fst.MEMM.TransitionIterator extends CRF.TransitionIterator implements Serializable
- Serialized Fields
  - sum
```
double sum
```
Class cc.mallet.fst.MEMMTrainer.MEMMOptimizableByLabelLikelihood extends CRFOptimizableByLabelLikelihood implements Serializable
- Serialized Fields
  - infiniteValues
```
java.util.BitSet infiniteValues
```
Class cc.mallet.fst.SimpleTagger.SimpleTaggerSentence2FeatureVectorSequence extends Pipe implements Serializable

serialVersionUID:

-2059308802200728625L
Class cc.mallet.fst.SumLatticeBeam.Factory extends SumLatticeFactory implements Serializable
- Serialized Fields
  - bw
```
int bw
```

Class cc.mallet.fst.SumLatticeDefault.Factory extends SumLatticeFactory implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream in)
                 throws java.io.IOException,
                        java.lang.ClassNotFoundException

Throws:: java.io.IOException; java.lang.ClassNotFoundException

writeObject

private void writeObject(java.io.ObjectOutputStream out)
                  throws java.io.IOException

Throws:: java.io.IOException

Class cc.mallet.fst.SumLatticeFactory extends java.lang.Object implements Serializable

Class cc.mallet.fst.SumLatticeScaling.Factory extends SumLatticeFactory implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream in)
                 throws java.io.IOException,
                        java.lang.ClassNotFoundException

Throws:: java.io.IOException; java.lang.ClassNotFoundException

writeObject

private void writeObject(java.io.ObjectOutputStream out)
                  throws java.io.IOException

Throws:: java.io.IOException

Class cc.mallet.fst.Transducer extends java.lang.Object implements Serializable

serialVersionUID:

1L
- Serialization Methods
  - readObject
```
private void readObject(java.io.ObjectInputStream in)
                 throws java.io.IOException,
                        java.lang.ClassNotFoundException
```
    Throws:
    
    java.io.IOException
    
    java.lang.ClassNotFoundException
  - writeObject
```
private void writeObject(java.io.ObjectOutputStream out)
                  throws java.io.IOException
```
    Throws:
    
    java.io.IOException
- Serialized Fields
  - inputPipe
```
Pipe inputPipe
```
    A pipe that should produce a Sequence in the "data" slot, (and possibly one in the "target" slot also
  - maxLatticeFactory
```
MaxLatticeFactory maxLatticeFactory
```
  - outputPipe
```
Pipe outputPipe
```
    A pipe that should expect the Transducer's output sequence in the "target" slot, and should produce something printable in the "source" slot that indicates the results of transduction.
  - sumLatticeFactory
```
SumLatticeFactory sumLatticeFactory
```

Class cc.mallet.fst.Transducer.State extends java.lang.Object implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream in)
                 throws java.io.IOException,
                        java.lang.ClassNotFoundException

Throws:: java.io.IOException; java.lang.ClassNotFoundException

writeObject

private void writeObject(java.io.ObjectOutputStream out)
                  throws java.io.IOException

Throws:: java.io.IOException

Class cc.mallet.fst.Transducer.TransitionIterator extends java.lang.Object implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream in)
                 throws java.io.IOException,
                        java.lang.ClassNotFoundException

Throws:: java.io.IOException; java.lang.ClassNotFoundException

writeObject

private void writeObject(java.io.ObjectOutputStream out)
                  throws java.io.IOException

Throws:: java.io.IOException

Package cc.mallet.fst.confidence
- Class cc.mallet.fst.confidence.ConstrainedForwardBackwardConfidenceEstimator extends TransducerConfidenceEstimator implements Serializable
  
  serialVersionUID:
  
  1L
- Class cc.mallet.fst.confidence.GammaAverageConfidenceEstimator extends TransducerConfidenceEstimator implements Serializable
  - Serialized Fields
    - string2stateIndex
      
      java.util.HashMap string2stateIndex
- Class cc.mallet.fst.confidence.GammaProductConfidenceEstimator extends TransducerConfidenceEstimator implements Serializable
  - Serialized Fields
    - string2stateIndex
      
      java.util.HashMap string2stateIndex
- Class cc.mallet.fst.confidence.MaxEntConfidenceEstimator extends TransducerConfidenceEstimator implements Serializable
  - Serialized Fields
    - correct
      
      java.lang.String correct
    - incorrect
      
      java.lang.String incorrect
    - meClassifier
      
      MaxEnt meClassifier
    - meTrainer
      
      MaxEntTrainer meTrainer
    - pipe
      
      Pipe pipe
- Class cc.mallet.fst.confidence.RandomConfidenceEstimator extends TransducerConfidenceEstimator implements Serializable
  - Serialized Fields
    - generator
      
      java.util.Random generator
- Class cc.mallet.fst.confidence.TransducerConfidenceEstimator extends java.lang.Object implements Serializable
  - Serialized Fields
    - model
      
      Transducer model
    - segmentConfidences
      
      java.util.Vector segmentConfidences
Package cc.mallet.fst.semi_supervised
- Class cc.mallet.fst.semi_supervised.CRFOptimizableByEntropyRegularization extends java.lang.Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - cachedGradient
      
      double[] cachedGradient
    - cachedGradientWeightsStamp
      
      int cachedGradientWeightsStamp
    - cachedValue
      
      double cachedValue
    - cachedValueWeightsStamp
      
      int cachedValueWeightsStamp
    - crf
      
      CRF crf
    - data
      
      InstanceList data
    - expectations
      
      CRF.Factors expectations
    - incrementor
      
      Transducer.Incrementor incrementor
    - scalingFactor
      
      double scalingFactor
Package cc.mallet.fst.semi_supervised.pr
- Class cc.mallet.fst.semi_supervised.pr.CachedDotTransitionIterator extends Transducer.TransitionIterator implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - index
      
      int index
    - input
      
      java.lang.Object input
    - nextIndex
      
      int nextIndex
    - source
      
      CRF.State source
    - weights
      
      double[] weights
- Class cc.mallet.fst.semi_supervised.pr.ConstraintsOptimizableByPR extends java.lang.Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - cachedDots
      
      double[][][][] cachedDots
    - cachedGradient
      
      double[] cachedGradient
    - cachedValue
      
      double cachedValue
    - cacheStale
      
      boolean cacheStale
    - crf
      
      CRF crf
    - executor
      
      java.util.concurrent.ThreadPoolExecutor executor
    - model
      
      PRAuxiliaryModel model
    - numParameters
      
      int numParameters
    - numThreads
      
      int numThreads
    - trainingSet
      
      InstanceList trainingSet
- Class cc.mallet.fst.semi_supervised.pr.CRFOptimizableByKL extends java.lang.Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - auxModel
      
      PRAuxiliaryModel auxModel
    - cachedGradient
      
      double[] cachedGradient
    - cachedGradientWeightsStamp
      
      int cachedGradientWeightsStamp
    - cachedValue
      
      double cachedValue
    - cachedValueWeightsStamp
      
      int cachedValueWeightsStamp
    - constraints
      
      CRF.Factors constraints
    - crf
      
      CRF crf
    - executor
      
      java.util.concurrent.ThreadPoolExecutor executor
    - expectations
      
      CRF.Factors expectations
    - finalProbList
      
      java.util.List<double[]> finalProbList
    - gaussianPriorVariance
      
      double gaussianPriorVariance
    - initialProbList
      
      java.util.List<double[]> initialProbList
    - numParameters
      
      int numParameters
    - numThreads
      
      int numThreads
    - trainingSet
      
      InstanceList trainingSet
    - transitionProbList
      
      java.util.List<double[][][]> transitionProbList
    - weight
      
      double weight
- Class cc.mallet.fst.semi_supervised.pr.PRAuxiliaryModel extends Transducer implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - baseModel
      
      CRF baseModel
    - constraints
      
      java.util.ArrayList<PRConstraint> constraints
    - numParameters
      
      int numParameters
    - parameters
      
      double[][] parameters

Package cc.mallet.fst.tests

Class cc.mallet.fst.tests.TestCRF.TestCRF2String extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream in)
                 throws java.io.IOException,
                        java.lang.ClassNotFoundException

Throws:: java.io.IOException; java.lang.ClassNotFoundException

writeObject

private void writeObject(java.io.ObjectOutputStream out)
                  throws java.io.IOException

Throws:: java.io.IOException

Class cc.mallet.fst.tests.TestCRF.TestCRFTokenSequenceRemoveSpaces extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream in)
                 throws java.io.IOException,
                        java.lang.ClassNotFoundException

Throws:: java.io.IOException; java.lang.ClassNotFoundException

writeObject

private void writeObject(java.io.ObjectOutputStream out)
                  throws java.io.IOException

Throws:: java.io.IOException

Class cc.mallet.fst.tests.TestMEMM.TestMEMM2String extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream in)
                 throws java.io.IOException

Throws:: java.io.IOException

writeObject

private void writeObject(java.io.ObjectOutputStream out)
                  throws java.io.IOException

Throws:: java.io.IOException

Class cc.mallet.fst.tests.TestMEMM.TestMEMMTokenSequenceRemoveSpaces extends Pipe implements Serializable

serialVersionUID:

1L
- Serialization Methods
  - readObject
```
private void readObject(java.io.ObjectInputStream in)
                 throws java.io.IOException
```
    Throws:
    
    java.io.IOException
  - writeObject
```
private void writeObject(java.io.ObjectOutputStream out)
                  throws java.io.IOException
```
    Throws:
    
    java.io.IOException

Package cc.mallet.optimize
- Class cc.mallet.optimize.InvalidOptimizableException extends OptimizationException implements Serializable
- Class cc.mallet.optimize.OptimizationException extends java.lang.RuntimeException implements Serializable
Package cc.mallet.pipe
- Class cc.mallet.pipe.AddClassifierTokenPredictions extends Pipe implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - m_binary
      
      boolean m_binary
    - m_dataAlphabet
      
      Alphabet m_dataAlphabet
    - m_inProduction
      
      boolean m_inProduction
    - m_predRanks2add
      
      int[] m_predRanks2add
    - m_tokenClassifiers
      
      AddClassifierTokenPredictions.TokenClassifiers m_tokenClassifiers
- Class cc.mallet.pipe.AddClassifierTokenPredictions.TokenClassifiers extends Classifier implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - m_numCV
      
      int m_numCV
    - m_randSeed
      
      int m_randSeed
    - m_table
      
      java.util.HashMap m_table
    - m_tokenClassifier
      
      Classifier m_tokenClassifier
    - m_trainer
      
      ClassifierTrainer m_trainer
- Class cc.mallet.pipe.Array2FeatureVector extends Pipe implements Serializable
- Class cc.mallet.pipe.AugmentableFeatureVectorAddConjunctions extends Pipe implements Serializable
  - Serialized Fields
    - conjunctions
      
      FeatureConjunction.List conjunctions
- Class cc.mallet.pipe.AugmentableFeatureVectorLogScale extends Pipe implements Serializable
- Class cc.mallet.pipe.BranchingPipe extends Pipe implements Serializable
  - Serialized Fields
    - pipes
      
      java.util.ArrayList<Pipe> pipes
      
      Deprecated.
- Class cc.mallet.pipe.CharSequence2CharNGrams extends Pipe implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - distinguishBorders
      
      boolean distinguishBorders
    - n
      
      int n
- Class cc.mallet.pipe.CharSequence2TokenSequence extends Pipe implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - lexer
      
      CharSequenceLexer lexer
- Class cc.mallet.pipe.CharSequenceArray2TokenSequence extends Pipe implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
- Class cc.mallet.pipe.CharSequenceLowercase extends Pipe implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
- Class cc.mallet.pipe.CharSequenceNoDiacritics extends Pipe implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - diacriticals_
      
      java.util.regex.Pattern diacriticals_
    - matcher_
      
      java.util.regex.Matcher matcher_
- Class cc.mallet.pipe.CharSequenceRemoveHTML extends Pipe implements Serializable
- Class cc.mallet.pipe.CharSequenceRemoveUUEncodedBlocks extends Pipe implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
- Class cc.mallet.pipe.CharSequenceReplace extends Pipe implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - regex
      
      java.util.regex.Pattern regex
    - replacement
      
      java.lang.String replacement
- Class cc.mallet.pipe.CharSequenceReplaceHtmlEntities extends Pipe implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
- Class cc.mallet.pipe.CharSubsequence extends Pipe implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - groupIndex
      
      int groupIndex
    - regex
      
      java.util.regex.Pattern regex
- Class cc.mallet.pipe.Classification2ConfidencePredictingFeatureVector extends Pipe implements Serializable
- Class cc.mallet.pipe.CountsToFeatureSequencePipe extends Pipe implements Serializable
- Class cc.mallet.pipe.Csv2Array extends Pipe implements Serializable
  - Serialized Fields
    - lexer
      
      CharSequenceLexer lexer
    - numberFeatures
      
      int numberFeatures
- Class cc.mallet.pipe.Csv2FeatureVector extends Pipe implements Serializable
- Class cc.mallet.pipe.Directory2FileIterator extends Pipe implements Serializable
  - Serialized Fields
    - fileFilter
      
      java.io.FileFilter fileFilter
    - labelPattern
      
      java.util.regex.Pattern labelPattern
- Class cc.mallet.pipe.FeatureCountPipe extends Pipe implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - counter
      
      FeatureCounter counter
- Class cc.mallet.pipe.FeatureDocFreqPipe extends Pipe implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - counter
      
      FeatureCounter counter
    - numInstances
      
      int numInstances
- Class cc.mallet.pipe.FeatureSequence2AugmentableFeatureVector extends Pipe implements Serializable
  - Serialized Fields
    - binary
      
      boolean binary
- Class cc.mallet.pipe.FeatureSequence2FeatureVector extends Pipe implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - binary
      
      boolean binary
- Class cc.mallet.pipe.FeatureSequenceConvolution extends Pipe implements Serializable
- Class cc.mallet.pipe.FeatureValueString2FeatureVector extends Pipe implements Serializable
- Class cc.mallet.pipe.FeatureVectorConjunctions extends Pipe implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
- Class cc.mallet.pipe.FeatureVectorSequence2FeatureVectors extends Pipe implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
- Class cc.mallet.pipe.Filename2CharSequence extends Pipe implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
- Class cc.mallet.pipe.FilterEmptyFeatureVectors extends Pipe implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
- Class cc.mallet.pipe.FixedVocabTokenizer extends Pipe implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - characterBuffer
      
      int[] characterBuffer
    - minimumLength
      
      int minimumLength
    - tokenBuffer
      
      int[] tokenBuffer
- Class cc.mallet.pipe.Input2CharSequence extends Pipe implements Serializable
  
  serialVersionUID:
  
  2L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - encoding
      
      java.lang.String encoding
- Class cc.mallet.pipe.InstanceListTrimFeaturesByCount extends Pipe implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - minCount
      
      int minCount
- Class cc.mallet.pipe.LineGroupString2TokenSequence extends Pipe implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - lexer
      
      CharSequenceLexer lexer
- Class cc.mallet.pipe.MakeAmpersandXMLFriendly extends Pipe implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
- Class cc.mallet.pipe.NGramPreprocessor extends Pipe implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - replacementSets
      
      java.util.ArrayList<NGramPreprocessor.ReplacementSet> replacementSets
- Class cc.mallet.pipe.NGramPreprocessor.ReplacementSet extends java.lang.Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - replacementIndex
      
      java.util.HashMap<java.lang.String,java.util.ArrayList<Replacement>> replacementIndex
- Class cc.mallet.pipe.Noop extends Pipe implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
- Class cc.mallet.pipe.Pipe extends java.lang.Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - readResolve
      
      public java.lang.Object readResolve() throws java.io.ObjectStreamException
      
      This gets called after readObject; it lets the object decide whether to return itself or return a previously read in version. We use a hashMap of instanceIds to determine if we have already read in this object.
      
      Throws:
      
      java.io.ObjectStreamException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - dataAlphabet
      
      Alphabet dataAlphabet
    - dataAlphabetResolved
      
      boolean dataAlphabetResolved
    - instanceId
      
      java.util.UUID instanceId
    - targetAlphabet
      
      Alphabet targetAlphabet
    - targetAlphabetResolved
      
      boolean targetAlphabetResolved
    - targetProcessing
      
      boolean targetProcessing
- Class cc.mallet.pipe.PipeException extends java.lang.Exception implements Serializable
- Class cc.mallet.pipe.PrintInput extends Pipe implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - prefix
      
      java.lang.String prefix
    - stream
      
      java.io.PrintStream stream
- Class cc.mallet.pipe.PrintInputAndTarget extends Pipe implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - prefix
      
      java.lang.String prefix
- Class cc.mallet.pipe.PrintTokenSequenceFeatures extends Pipe implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - prefix
      
      java.lang.String prefix
- Class cc.mallet.pipe.SaveDataInSource extends Pipe implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
- Class cc.mallet.pipe.SelectiveSGML2TokenSequence extends Pipe implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - allowedTags
      
      java.util.Set allowedTags
    - backgroundTag
      
      java.lang.String backgroundTag
    - lexer
      
      CharSequenceLexer lexer
    - sgmlPattern
      
      java.util.regex.Pattern sgmlPattern
- Class cc.mallet.pipe.SerialPipes extends Pipe implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - pipes
      
      java.util.ArrayList<Pipe> pipes
- Class cc.mallet.pipe.SGML2TokenSequence extends Pipe implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - backgroundTag
      
      java.lang.String backgroundTag
    - lexer
      
      CharSequenceLexer lexer
    - saveSource
      
      boolean saveSource
    - sgmlPattern
      
      java.util.regex.Pattern sgmlPattern
- Class cc.mallet.pipe.SimpleTaggerSentence2StringTokenization extends SimpleTaggerSentence2TokenSequence implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
- Class cc.mallet.pipe.SimpleTaggerSentence2TokenSequence extends Pipe implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - setTokensAsFeatures
      
      boolean setTokensAsFeatures
- Class cc.mallet.pipe.SimpleTokenizer extends Pipe implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - stoplist
      
      java.util.HashSet<java.lang.String> stoplist
- Class cc.mallet.pipe.SourceLocation2TokenSequence extends Pipe implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - lexer
      
      CharSequenceLexer lexer
- Class cc.mallet.pipe.StringAddNewLineDelimiter extends Pipe implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - delim
      
      java.lang.String delim
- Class cc.mallet.pipe.StringList2FeatureSequence extends Pipe implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - totalNanos
      
      long totalNanos
- Class cc.mallet.pipe.SvmLight2FeatureVectorAndLabel extends Pipe implements Serializable
  
  serialVersionUID:
  
  1L
- Class cc.mallet.pipe.Target2Double extends Pipe implements Serializable
- Class cc.mallet.pipe.Target2FeatureSequence extends Pipe implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
- Class cc.mallet.pipe.Target2Integer extends Pipe implements Serializable
- Class cc.mallet.pipe.Target2Label extends Pipe implements Serializable
  
  serialVersionUID:
  
  -461155063551297878L
- Class cc.mallet.pipe.Target2LabelSequence extends Pipe implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
- Class cc.mallet.pipe.TargetRememberLastLabel extends Pipe implements Serializable
  - Serialized Fields
    - backgroundLabel
      
      java.lang.String backgroundLabel
    - offset
      
      boolean offset
- Class cc.mallet.pipe.TargetStringToFeatures extends Pipe implements Serializable
  
  serialVersionUID:
  
  1L
- Class cc.mallet.pipe.Token2FeatureVector extends Pipe implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - augmentable
      
      boolean augmentable
    - binary
      
      boolean binary
- Class cc.mallet.pipe.TokenSequence2FeatureSequence extends Pipe implements Serializable
- Class cc.mallet.pipe.TokenSequence2FeatureSequenceWithBigrams extends Pipe implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - biDictionary
      
      Alphabet biDictionary
- Class cc.mallet.pipe.TokenSequence2FeatureVectorSequence extends Pipe implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - augmentable
      
      boolean augmentable
    - binary
      
      boolean binary
    - growAlphabet
      
      boolean growAlphabet
- Class cc.mallet.pipe.TokenSequence2PorterStems extends Pipe implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
- Class cc.mallet.pipe.TokenSequenceLowercase extends Pipe implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
- Class cc.mallet.pipe.TokenSequenceMatchDataAndTarget extends Pipe implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - dataGroup
      
      int dataGroup
    - regex
      
      java.util.regex.Pattern regex
    - targetGroup
      
      int targetGroup
- Class cc.mallet.pipe.TokenSequenceNGrams extends Pipe implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - gramSizes
      
      int[] gramSizes
- Class cc.mallet.pipe.TokenSequenceParseFeatureString extends Pipe implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - nameValueSeparator
      
      java.lang.String nameValueSeparator
    - realValued
      
      boolean realValued
    - specifyFeatureNames
      
      boolean specifyFeatureNames
- Class cc.mallet.pipe.TokenSequenceRemoveNonAlpha extends Pipe implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - markDeletions
      
      boolean markDeletions
- Class cc.mallet.pipe.TokenSequenceRemoveStopPatterns extends Pipe implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - stopPatterns
      
      java.util.ArrayList<java.util.regex.Pattern> stopPatterns
- Class cc.mallet.pipe.TokenSequenceRemoveStopwords extends Pipe implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - caseSensitive
      
      boolean caseSensitive
    - markDeletions
      
      boolean markDeletions
    - stoplist
      
      java.util.HashSet<java.lang.String> stoplist
- Class cc.mallet.pipe.ValueString2FeatureVector extends Pipe implements Serializable
Package cc.mallet.pipe.tests
- Class cc.mallet.pipe.tests.TestInstancePipe.Array2ArrayIterator extends Pipe implements Serializable
- Class cc.mallet.pipe.tests.TestSGML2TokenSequence.Array2ArrayIterator extends Pipe implements Serializable

Package cc.mallet.pipe.tsf

Class cc.mallet.pipe.tsf.CountMatches extends Pipe implements Serializable
- Serialized Fields
  - countIsBinary
```
boolean countIsBinary
```
  - feature
```
java.lang.String feature
```
  - normalizeByCharLength
```
boolean normalizeByCharLength
```
  - regex
```
java.util.regex.Pattern regex
```
Class cc.mallet.pipe.tsf.CountMatchesAlignedWithOffsets extends Pipe implements Serializable
- Serialized Fields
  - feature
```
java.lang.String feature
```
  - normalizeByMatchCount
```
boolean normalizeByMatchCount
```
  - offsets
```
int[] offsets
```
  - regex
```
java.util.regex.Pattern regex
```
Class cc.mallet.pipe.tsf.CountMatchesMatching extends Pipe implements Serializable
- Serialized Fields
  - feature
```
java.lang.String feature
```
  - moreSpecificRegex
```
java.util.regex.Pattern moreSpecificRegex
```
  - normalizeByRegexMatches
```
boolean normalizeByRegexMatches
```
  - regex
```
java.util.regex.Pattern regex
```

Class cc.mallet.pipe.tsf.FeaturesInWindow extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream in)
                 throws java.io.IOException,
                        java.lang.ClassNotFoundException

Throws:: java.io.IOException; java.lang.ClassNotFoundException

writeObject

private void writeObject(java.io.ObjectOutputStream out)
                  throws java.io.IOException

Throws:: java.io.IOException

Serialized Fields

featureRegex
```
java.util.regex.Pattern featureRegex
```
includeBeginEndBoundaries
```
boolean includeBeginEndBoundaries
```
includeCurrentToken
```
boolean includeCurrentToken
```
leftBoundary
```
int leftBoundary
```
namePrefix
```
java.lang.String namePrefix
```
namePrefixLeft
```
java.lang.String namePrefixLeft
```
rightBoundary
```
int rightBoundary
```

Class cc.mallet.pipe.tsf.FeaturesOfFirstMention extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream in)
                 throws java.io.IOException,
                        java.lang.ClassNotFoundException

Throws:: java.io.IOException; java.lang.ClassNotFoundException

writeObject

private void writeObject(java.io.ObjectOutputStream out)
                  throws java.io.IOException

Throws:: java.io.IOException

Serialized Fields

featureRegex
```
java.util.regex.Pattern featureRegex
```
filterRegex
```
java.util.regex.Pattern filterRegex
```
firstMentionName
```
java.lang.String firstMentionName
```
includeFiltered
```
boolean includeFiltered
```
namePrefix
```
java.lang.String namePrefix
```

Class cc.mallet.pipe.tsf.LexiconMembership extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream in)
                 throws java.io.IOException,
                        java.lang.ClassNotFoundException

Throws:: java.io.IOException; java.lang.ClassNotFoundException

writeObject

private void writeObject(java.io.ObjectOutputStream out)
                  throws java.io.IOException

Throws:: java.io.IOException

Serialized Fields

ignoreCase
```
boolean ignoreCase
```

lexicon

com.carrotsearch.hppc.ObjectHashSet lexicon

name
```
java.lang.String name
```

Class cc.mallet.pipe.tsf.OffsetConjunctions extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream in)
                 throws java.io.IOException,
                        java.lang.ClassNotFoundException

Throws:: java.io.IOException; java.lang.ClassNotFoundException

writeObject

private void writeObject(java.io.ObjectOutputStream out)
                  throws java.io.IOException

Throws:: java.io.IOException

Serialized Fields

conjunctions
```
int[][] conjunctions
```
featureRegex
```
java.util.regex.Pattern featureRegex
```
includeOriginalSingletons
```
boolean includeOriginalSingletons
```

Class cc.mallet.pipe.tsf.OffsetFeatureConjunction extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream in)
                 throws java.io.IOException,
                        java.lang.ClassNotFoundException

Throws:: java.io.IOException; java.lang.ClassNotFoundException

writeObject

private void writeObject(java.io.ObjectOutputStream out)
                  throws java.io.IOException

Throws:: java.io.IOException

Serialized Fields

featurePatterns

java.util.regex.Pattern[] featurePatterns

isNonNegated
```
boolean[] isNonNegated
```
offsets
```
int[] offsets
```
tagAllTimesteps
```
boolean tagAllTimesteps
```
thisFeatureName
```
java.lang.String thisFeatureName
```

Class cc.mallet.pipe.tsf.OffsetPropertyConjunctions extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream in)
                 throws java.io.IOException,
                        java.lang.ClassNotFoundException

Throws:: java.io.IOException; java.lang.ClassNotFoundException

writeObject

private void writeObject(java.io.ObjectOutputStream out)
                  throws java.io.IOException

Throws:: java.io.IOException

Serialized Fields

conjunctions
```
int[][] conjunctions
```
includeOriginalSingletons
```
boolean includeOriginalSingletons
```
propertyKey
```
java.lang.String propertyKey
```

Class cc.mallet.pipe.tsf.RegexMatches extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream in)
                 throws java.io.IOException,
                        java.lang.ClassNotFoundException

Throws:: java.io.IOException; java.lang.ClassNotFoundException

writeObject

private void writeObject(java.io.ObjectOutputStream out)
                  throws java.io.IOException

Throws:: java.io.IOException

Serialized Fields

feature
```
java.lang.String feature
```
regex
```
java.util.regex.Pattern regex
```

Class cc.mallet.pipe.tsf.SequencePrintingPipe extends Pipe implements Serializable
- Serialized Fields
  - writer
```
java.io.PrintWriter writer
```

Class cc.mallet.pipe.tsf.Target2BIOFormat extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream in)
                 throws java.io.IOException,
                        java.lang.ClassNotFoundException

Throws:: java.io.IOException; java.lang.ClassNotFoundException

writeObject

private void writeObject(java.io.ObjectOutputStream out)
                  throws java.io.IOException

Throws:: java.io.IOException

Serialized Fields
- backgroundTag
```
java.lang.String backgroundTag
```

Class cc.mallet.pipe.tsf.TokenFirstPosition extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream in)
                 throws java.io.IOException,
                        java.lang.ClassNotFoundException

Throws:: java.io.IOException; java.lang.ClassNotFoundException

writeObject

private void writeObject(java.io.ObjectOutputStream out)
                  throws java.io.IOException

Throws:: java.io.IOException

Serialized Fields
- featureName
```
java.lang.String featureName
```

Class cc.mallet.pipe.tsf.TokenText extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream in)
                 throws java.io.IOException,
                        java.lang.ClassNotFoundException

Throws:: java.io.IOException; java.lang.ClassNotFoundException

writeObject

private void writeObject(java.io.ObjectOutputStream out)
                  throws java.io.IOException

Throws:: java.io.IOException

Serialized Fields

matchingRegex
```
java.util.regex.Pattern matchingRegex
```
prefix
```
java.lang.String prefix
```

Class cc.mallet.pipe.tsf.TokenTextCharNGrams extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream in)
                 throws java.io.IOException,
                        java.lang.ClassNotFoundException

Throws:: java.io.IOException; java.lang.ClassNotFoundException

writeObject

private void writeObject(java.io.ObjectOutputStream out)
                  throws java.io.IOException

Throws:: java.io.IOException

Serialized Fields

distinguishBorders
```
boolean distinguishBorders
```
gramSizes
```
int[] gramSizes
```
prefix
```
java.lang.String prefix
```

Class cc.mallet.pipe.tsf.TokenTextCharPrefix extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream in)
                 throws java.io.IOException,
                        java.lang.ClassNotFoundException

Throws:: java.io.IOException; java.lang.ClassNotFoundException

writeObject

private void writeObject(java.io.ObjectOutputStream out)
                  throws java.io.IOException

Throws:: java.io.IOException

Serialized Fields
- prefix
```
java.lang.String prefix
```
- prefixLength
```
int prefixLength
```

Class cc.mallet.pipe.tsf.TokenTextCharSuffix extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream in)
                 throws java.io.IOException,
                        java.lang.ClassNotFoundException

Throws:: java.io.IOException; java.lang.ClassNotFoundException

writeObject

private void writeObject(java.io.ObjectOutputStream out)
                  throws java.io.IOException

Throws:: java.io.IOException

Serialized Fields
- prefix
```
java.lang.String prefix
```
- suffixLength
```
int suffixLength
```

Class cc.mallet.pipe.tsf.TokenTextNGrams extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream in)
                 throws java.io.IOException,
                        java.lang.ClassNotFoundException

Throws:: java.io.IOException; java.lang.ClassNotFoundException

writeObject

private void writeObject(java.io.ObjectOutputStream out)
                  throws java.io.IOException

Throws:: java.io.IOException

Serialized Fields

distinguishBorders
```
boolean distinguishBorders
```
gramSizes
```
int[] gramSizes
```
prefix
```
java.lang.String prefix
```

Class cc.mallet.pipe.tsf.TrieLexiconMembership extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream in)
                 throws java.io.IOException,
                        java.lang.ClassNotFoundException

Throws:: java.io.IOException; java.lang.ClassNotFoundException

writeObject

private void writeObject(java.io.ObjectOutputStream out)
                  throws java.io.IOException

Throws:: java.io.IOException

Serialized Fields

ignoreCase
```
boolean ignoreCase
```

lexicon

cc.mallet.pipe.tsf.TrieLexiconMembership.TrieLexicon lexicon

name
```
java.lang.String name
```

Class cc.mallet.pipe.tsf.WordVectors extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream in)
                 throws java.io.IOException,
                        java.lang.ClassNotFoundException

Throws:: java.io.IOException; java.lang.ClassNotFoundException

writeObject

private void writeObject(java.io.ObjectOutputStream out)
                  throws java.io.IOException

Throws:: java.io.IOException

Serialized Fields

prefix
```
java.lang.String prefix
```

wordVectors

java.util.HashMap<java.lang.String,double[]> wordVectors

Package cc.mallet.share.casutton.ner
- Class cc.mallet.share.casutton.ner.ConllNer2003Sentence2TokenSequence extends Pipe implements Serializable
  
  serialVersionUID:
  
  -7326674871670572522L
  - Serialized Fields
    - doConjunctions
      
      boolean doConjunctions
    - doDigitCollapses
      
      boolean doDigitCollapses
    - doDowncasing
      
      boolean doDowncasing
    - doPhrases
      
      boolean doPhrases
    - doSpelling
      
      boolean doSpelling
    - doTags
      
      boolean doTags
    - saveSource
      
      boolean saveSource
Package cc.mallet.share.mccallum.ner
- Class cc.mallet.share.mccallum.ner.ConllNer2003Sentence2TokenSequence extends Pipe implements Serializable
  - Serialized Fields
    - doConjunctions
      
      boolean doConjunctions
    - doDigitCollapses
      
      boolean doDigitCollapses
    - doDowncasing
      
      boolean doDowncasing
    - doPhrases
      
      boolean doPhrases
    - doSpelling
      
      boolean doSpelling
    - doTags
      
      boolean doTags
    - saveSource
      
      boolean saveSource
- Class cc.mallet.share.mccallum.ner.TokenSequenceDocHeader extends Pipe implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
Package cc.mallet.share.upenn.ner
- Class cc.mallet.share.upenn.ner.FeatureWindow extends Pipe implements Serializable
  - Serialized Fields
    - left
      
      int left
    - right
      
      int right
- Class cc.mallet.share.upenn.ner.LengthBins extends Pipe implements Serializable
  - Serialized Fields
    - binNames
      
      java.lang.String[] binNames
    - bins
      
      int[] bins
    - name
      
      java.lang.String name
- Class cc.mallet.share.upenn.ner.ListMember extends Pipe implements Serializable
  - Serialized Fields
    - ignoreCase
      
      boolean ignoreCase
    - lexicon
      
      com.carrotsearch.hppc.ObjectHashSet lexicon
    - max
      
      int max
    - min
      
      int min
    - name
      
      java.lang.String name
- Class cc.mallet.share.upenn.ner.LongRegexMatches extends Pipe implements Serializable
  - Serialized Fields
    - max
      
      int max
    - min
      
      int min
    - name
      
      java.lang.String name
    - regex
      
      java.util.regex.Pattern regex
- Class cc.mallet.share.upenn.ner.NEPipes extends SerialPipes implements Serializable
Package cc.mallet.share.weili.ner.enron
- Class cc.mallet.share.weili.ner.enron.EnronMessage2TokenSequence extends Pipe implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - headerPersonNames
      
      java.util.HashSet headerPersonNames
    - saveSource
      
      boolean saveSource

Package cc.mallet.topics

Class cc.mallet.topics.DMRInferencer extends TopicInferencer implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream in)
                 throws java.io.IOException,
                        java.lang.ClassNotFoundException

Throws:: java.io.IOException; java.lang.ClassNotFoundException

writeObject

private void writeObject(java.io.ObjectOutputStream out)
                  throws java.io.IOException

Throws:: java.io.IOException

Serialized Fields
- defaultFeatureIndex
```
int defaultFeatureIndex
```
- dmrParameters
```
MaxEnt dmrParameters
```
- numFeatures
```
int numFeatures
```

Class cc.mallet.topics.DMRTopicModel extends ParallelTopicModel implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream in)
                 throws java.io.IOException,
                        java.lang.ClassNotFoundException

Throws:: java.io.IOException; java.lang.ClassNotFoundException

writeObject

private void writeObject(java.io.ObjectOutputStream out)
                  throws java.io.IOException

Throws:: java.io.IOException

Serialized Fields

alphaCache
```
double[][] alphaCache
```
alphaSumCache
```
double[] alphaSumCache
```
defaultFeatureIndex
```
int defaultFeatureIndex
```
dmrParameters
```
MaxEnt dmrParameters
```
initialAlpha
```
double initialAlpha
```
numFeatures
```
int numFeatures
```
parameterPipe
```
Pipe parameterPipe
```
parametersFilename
```
java.lang.String parametersFilename
```
saveParametersInterval
```
int saveParametersInterval
```

Class cc.mallet.topics.HierarchicalLDA extends java.lang.Object implements Serializable

Serialized Fields

alpha
```
double alpha
```
displayTopicsInterval
```
int displayTopicsInterval
```

documentLeaves

cc.mallet.topics.HierarchicalLDA.NCRPNode[] documentLeaves

eta
```
double eta
```
etaSum
```
double etaSum
```
gamma
```
double gamma
```
instances
```
InstanceList instances
```
levels
```
int[][] levels
```

node

cc.mallet.topics.HierarchicalLDA.NCRPNode node

numDocuments
```
int numDocuments
```
numLevels
```
int numLevels
```
numTypes
```
int numTypes
```
numWordsToDisplay
```
int numWordsToDisplay
```
random
```
Randoms random
```

rootNode

cc.mallet.topics.HierarchicalLDA.NCRPNode rootNode

showProgress
```
boolean showProgress
```
stateFile
```
java.lang.String stateFile
```
testing
```
InstanceList testing
```
totalNodes
```
int totalNodes
```

Class cc.mallet.topics.LabeledLDA extends java.lang.Object implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream in)
                 throws java.io.IOException,
                        java.lang.ClassNotFoundException

Throws:: java.io.IOException; java.lang.ClassNotFoundException

writeObject

private void writeObject(java.io.ObjectOutputStream out)
                  throws java.io.IOException

Throws:: java.io.IOException

Serialized Fields

alpha
```
double alpha
```
alphabet
```
Alphabet alphabet
```
beta
```
double beta
```
betaSum
```
double betaSum
```

data

java.util.ArrayList<TopicAssignment> data

labelAlphabet
```
Alphabet labelAlphabet
```
numIterations
```
int numIterations
```
numTopics
```
int numTopics
```
numTypes
```
int numTypes
```
oneDocTopicCounts
```
int[] oneDocTopicCounts
```
printLogLikelihood
```
boolean printLogLikelihood
```
random
```
Randoms random
```
showTopicsInterval
```
int showTopicsInterval
```
tokensPerTopic
```
int[] tokensPerTopic
```
topicAlphabet
```
LabelAlphabet topicAlphabet
```
typeTopicCounts
```
int[][] typeTopicCounts
```
wordsPerTopic
```
int wordsPerTopic
```

Class cc.mallet.topics.LDA extends java.lang.Object implements Serializable

serialVersionUID:

1L
- Serialization Methods
  - readObject
```
private void readObject(java.io.ObjectInputStream in)
                 throws java.io.IOException,
                        java.lang.ClassNotFoundException
```
    Deprecated.
    
    Throws:
    
    java.io.IOException
    
    java.lang.ClassNotFoundException
  - writeObject
```
private void writeObject(java.io.ObjectOutputStream out)
                  throws java.io.IOException
```
    Deprecated.
    
    Throws:
    
    java.io.IOException
- Serialized Fields
  - alpha
```
double alpha
```
    Deprecated.
  - beta
```
double beta
```
    Deprecated.
  - docTopicCounts
```
int[][] docTopicCounts
```
    Deprecated.
  - ilist
```
InstanceList ilist
```
    Deprecated.
  - numTokens
```
int numTokens
```
    Deprecated.
  - numTopics
```
int numTopics
```
    Deprecated.
  - numTypes
```
int numTypes
```
    Deprecated.
  - tAlpha
```
double tAlpha
```
    Deprecated.
  - tokensPerTopic
```
int[] tokensPerTopic
```
    Deprecated.
  - topics
```
int[][] topics
```
    Deprecated.
  - typeTopicCounts
```
int[][] typeTopicCounts
```
    Deprecated.
  - vBeta
```
double vBeta
```
    Deprecated.
Class cc.mallet.topics.LDAHyper extends java.lang.Object implements Serializable

serialVersionUID:

1L
- Serialization Methods
  - readObject
```
private void readObject(java.io.ObjectInputStream in)
                 throws java.io.IOException,
                        java.lang.ClassNotFoundException
```
    Deprecated.
    
    Throws:
    
    java.io.IOException
    
    java.lang.ClassNotFoundException
  - writeObject
```
private void writeObject(java.io.ObjectOutputStream out)
                  throws java.io.IOException
```
    Deprecated.
    
    Throws:
    
    java.io.IOException
- Serialized Fields
  - alpha
```
double[] alpha
```
    Deprecated.
  - alphabet
```
Alphabet alphabet
```
    Deprecated.
  - alphaSum
```
double alphaSum
```
    Deprecated.
  - beta
```
double beta
```
    Deprecated.
  - betaSum
```
double betaSum
```
    Deprecated.
  - betaTopicCount
```
int betaTopicCount
```
    Deprecated.
  - burninPeriod
```
int burninPeriod
```
    Deprecated.
  - cachedCoefficients
```
double[] cachedCoefficients
```
    Deprecated.
  - data
```
java.util.ArrayList<LDAHyper.Topication> data
```
    Deprecated.
  - docLengthCounts
```
int[] docLengthCounts
```
    Deprecated.
  - formatter
```
java.text.NumberFormat formatter
```
    Deprecated.
  - iterationsSoFar
```
int iterationsSoFar
```
    Deprecated.
  - numIterations
```
int numIterations
```
    Deprecated.
  - numTopics
```
int numTopics
```
    Deprecated.
  - numTypes
```
int numTypes
```
    Deprecated.
  - oneDocTopicCounts
```
int[] oneDocTopicCounts
```
    Deprecated.
  - optimizeInterval
```
int optimizeInterval
```
    Deprecated.
  - outputModelFilename
```
java.lang.String outputModelFilename
```
    Deprecated.
  - outputModelInterval
```
int outputModelInterval
```
    Deprecated.
  - printLogLikelihood
```
boolean printLogLikelihood
```
    Deprecated.
  - random
```
Randoms random
```
    Deprecated.
  - saveSampleInterval
```
int saveSampleInterval
```
    Deprecated.
  - saveStateInterval
```
int saveStateInterval
```
    Deprecated.
  - showTopicsInterval
```
int showTopicsInterval
```
    Deprecated.
  - smoothingOnlyCount
```
int smoothingOnlyCount
```
    Deprecated.
  - smoothingOnlyMass
```
double smoothingOnlyMass
```
    Deprecated.
  - stateFilename
```
java.lang.String stateFilename
```
    Deprecated.
  - testing
```
InstanceList testing
```
    Deprecated.
  - tokensPerTopic
```
int[] tokensPerTopic
```
    Deprecated.
  - topicAlphabet
```
LabelAlphabet topicAlphabet
```
    Deprecated.
  - topicDocCounts
```
int[][] topicDocCounts
```
    Deprecated.
  - topicTermCount
```
int topicTermCount
```
    Deprecated.
  - typeTopicCounts
```
com.carrotsearch.hppc.IntIntHashMap[] typeTopicCounts
```
    Deprecated.
  - wordsPerTopic
```
int wordsPerTopic
```
    Deprecated.

Class cc.mallet.topics.LDAHyper.Topication extends java.lang.Object implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream in)
                 throws java.io.IOException,
                        java.lang.ClassNotFoundException

Throws:: java.io.IOException; java.lang.ClassNotFoundException

writeObject

private void writeObject(java.io.ObjectOutputStream out)
                  throws java.io.IOException

Throws:: java.io.IOException

Serialized Fields

instance
```
Instance instance
```
model
```
LDAHyper model
```
topicDistribution
```
Labeling topicDistribution
```
topicSequence
```
LabelSequence topicSequence
```

Class cc.mallet.topics.LDAStream extends LDAHyper implements Serializable
- Serialized Fields
  - test
```
java.util.ArrayList<LDAHyper.Topication> test
```

Class cc.mallet.topics.MarginalProbEstimator extends java.lang.Object implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream in)
                 throws java.io.IOException,
                        java.lang.ClassNotFoundException

Throws:: java.io.IOException; java.lang.ClassNotFoundException

writeObject

private void writeObject(java.io.ObjectOutputStream out)
                  throws java.io.IOException

Throws:: java.io.IOException

Serialized Fields

alpha
```
double[] alpha
```
alphaSum
```
double alphaSum
```
beta
```
double beta
```
betaSum
```
double betaSum
```
cachedCoefficients
```
double[] cachedCoefficients
```
numTopics
```
int numTopics
```
printWordProbabilities
```
boolean printWordProbabilities
```
random
```
Randoms random
```
smoothingOnlyMass
```
double smoothingOnlyMass
```
tokensPerTopic
```
int[] tokensPerTopic
```
topicBits
```
int topicBits
```
topicMask
```
int topicMask
```
typeTopicCounts
```
int[][] typeTopicCounts
```

Class cc.mallet.topics.NPTopicModel extends java.lang.Object implements Serializable

Serialized Fields

alpha
```
double alpha
```
alphabet
```
Alphabet alphabet
```
beta
```
double beta
```
betaSum
```
double betaSum
```

data

java.util.ArrayList<TopicAssignment> data

docsPerTopic

com.carrotsearch.hppc.IntIntHashMap docsPerTopic

formatter
```
java.text.NumberFormat formatter
```
gamma
```
double gamma
```
maxTopic
```
int maxTopic
```
numTopics
```
int numTopics
```
numTypes
```
int numTypes
```
printLogLikelihood
```
boolean printLogLikelihood
```
random
```
Randoms random
```
showTopicsInterval
```
int showTopicsInterval
```

tokensPerTopic

com.carrotsearch.hppc.IntIntHashMap tokensPerTopic

topicAlphabet
```
LabelAlphabet topicAlphabet
```
totalDocTopics
```
int totalDocTopics
```

typeTopicCounts

com.carrotsearch.hppc.IntIntHashMap[] typeTopicCounts

wordsPerTopic
```
int wordsPerTopic
```

Class cc.mallet.topics.ParallelTopicModel extends java.lang.Object implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream in)
                 throws java.io.IOException,
                        java.lang.ClassNotFoundException

Throws:: java.io.IOException; java.lang.ClassNotFoundException

writeObject

private void writeObject(java.io.ObjectOutputStream out)
                  throws java.io.IOException

Throws:: java.io.IOException

Serialized Fields

alpha
```
double[] alpha
```
alphabet
```
Alphabet alphabet
```
alphaSum
```
double alphaSum
```
beta
```
double beta
```
betaSum
```
double betaSum
```
burninPeriod
```
int burninPeriod
```

data

java.util.ArrayList<TopicAssignment> data

docLengthCounts
```
int[] docLengthCounts
```
formatter
```
java.text.NumberFormat formatter
```
maxTypeCount
```
int maxTypeCount
```
modelFilename
```
java.lang.String modelFilename
```
numIterations
```
int numIterations
```
numThreads
```
int numThreads
```
numTopics
```
int numTopics
```
numTypes
```
int numTypes
```
optimizeInterval
```
int optimizeInterval
```
printLogLikelihood
```
boolean printLogLikelihood
```
randomSeed
```
int randomSeed
```
saveModelInterval
```
int saveModelInterval
```
saveSampleInterval
```
int saveSampleInterval
```
saveStateInterval
```
int saveStateInterval
```
showTopicsInterval
```
int showTopicsInterval
```
stateFilename
```
java.lang.String stateFilename
```
temperingInterval
```
int temperingInterval
```
tokensPerTopic
```
int[] tokensPerTopic
```
topicAlphabet
```
LabelAlphabet topicAlphabet
```
topicBits
```
int topicBits
```
topicDocCounts
```
int[][] topicDocCounts
```
topicMask
```
int topicMask
```
totalTokens
```
long totalTokens
```
typeTopicCounts
```
int[][] typeTopicCounts
```
typeTotals
```
int[] typeTotals
```
usingSymmetricAlpha
```
boolean usingSymmetricAlpha
```
wordsPerTopic
```
int wordsPerTopic
```

Class cc.mallet.topics.PolylingualTopicModel extends java.lang.Object implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream in)
                 throws java.io.IOException,
                        java.lang.ClassNotFoundException

Throws:: java.io.IOException; java.lang.ClassNotFoundException

writeObject

private void writeObject(java.io.ObjectOutputStream out)
                  throws java.io.IOException

Throws:: java.io.IOException

Serialized Fields

alpha
```
double[] alpha
```
alphabets
```
Alphabet[] alphabets
```
alphaSum
```
double alphaSum
```
betas
```
double[] betas
```
betaSums
```
double[] betaSums
```
betaTopicCount
```
int betaTopicCount
```
burninPeriod
```
int burninPeriod
```

data

java.util.ArrayList<PolylingualTopicModel.TopicAssignment> data

docLengthCounts
```
int[] docLengthCounts
```
formatter
```
java.text.NumberFormat formatter
```
iterationsSoFar
```
int iterationsSoFar
```
languageCachedCoefficients
```
double[][] languageCachedCoefficients
```
languageMaxTypeCounts
```
int[] languageMaxTypeCounts
```
languageSmoothingOnlyMasses
```
double[] languageSmoothingOnlyMasses
```
languageTokensPerTopic
```
int[][] languageTokensPerTopic
```
languageTypeTopicCounts
```
int[][][] languageTypeTopicCounts
```
modelFilename
```
java.lang.String modelFilename
```
numIterations
```
int numIterations
```
numLanguages
```
int numLanguages
```
numStopwords
```
int numStopwords
```
numTopics
```
int numTopics
```
oneDocTopicCounts
```
int[] oneDocTopicCounts
```
optimizeInterval
```
int optimizeInterval
```
printLogLikelihood
```
boolean printLogLikelihood
```
random
```
Randoms random
```
saveModelInterval
```
int saveModelInterval
```
saveSampleInterval
```
int saveSampleInterval
```
saveStateInterval
```
int saveStateInterval
```
showTopicsInterval
```
int showTopicsInterval
```
smoothingOnlyCount
```
int smoothingOnlyCount
```
stateFilename
```
java.lang.String stateFilename
```

testingIDs

java.util.HashSet<java.lang.String> testingIDs

topicAlphabet
```
LabelAlphabet topicAlphabet
```
topicBits
```
int topicBits
```
topicDocCounts
```
int[][] topicDocCounts
```
topicMask
```
int topicMask
```
topicTermCount
```
int topicTermCount
```
vocabularySizes
```
int[] vocabularySizes
```
wordsPerTopic
```
int wordsPerTopic
```

Class cc.mallet.topics.PolylingualTopicModel.TopicAssignment extends java.lang.Object implements Serializable
- Serialized Fields
  - instances
```
Instance[] instances
```
  - topicDistribution
```
Labeling topicDistribution
```
  - topicSequences
```
LabelSequence[] topicSequences
```
Class cc.mallet.topics.RTopicModel extends ParallelTopicModel implements Serializable
- Serialized Fields
  - instances
```
InstanceList instances
```

Class cc.mallet.topics.SimpleLDA extends java.lang.Object implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream in)
                 throws java.io.IOException,
                        java.lang.ClassNotFoundException

Throws:: java.io.IOException; java.lang.ClassNotFoundException

writeObject

private void writeObject(java.io.ObjectOutputStream out)
                  throws java.io.IOException

Throws:: java.io.IOException

Serialized Fields

alpha
```
double alpha
```
alphabet
```
Alphabet alphabet
```
alphaSum
```
double alphaSum
```
beta
```
double beta
```
betaSum
```
double betaSum
```

data

java.util.ArrayList<TopicAssignment> data

formatter
```
java.text.NumberFormat formatter
```
numTopics
```
int numTopics
```
numTypes
```
int numTypes
```
oneDocTopicCounts
```
int[] oneDocTopicCounts
```
printLogLikelihood
```
boolean printLogLikelihood
```
random
```
Randoms random
```
showTopicsInterval
```
int showTopicsInterval
```
tokensPerTopic
```
int[] tokensPerTopic
```
topicAlphabet
```
LabelAlphabet topicAlphabet
```
typeTopicCounts
```
int[][] typeTopicCounts
```
wordsPerTopic
```
int wordsPerTopic
```

Class cc.mallet.topics.TopicAssignment extends java.lang.Object implements Serializable
- Serialized Fields
  - instance
```
Instance instance
```
  - topicDistribution
```
Labeling topicDistribution
```
  - topicSequence
```
LabelSequence topicSequence
```

Class cc.mallet.topics.TopicInferencer extends java.lang.Object implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream in)
                 throws java.io.IOException,
                        java.lang.ClassNotFoundException

Throws:: java.io.IOException; java.lang.ClassNotFoundException

writeObject

private void writeObject(java.io.ObjectOutputStream out)
                  throws java.io.IOException

Throws:: java.io.IOException

Serialized Fields

alpha
```
double[] alpha
```
alphabet
```
Alphabet alphabet
```
beta
```
double beta
```
betaSum
```
double betaSum
```
cachedCoefficients
```
double[] cachedCoefficients
```
numTopics
```
int numTopics
```
numTypes
```
int numTypes
```
random
```
Randoms random
```
smoothingOnlyMass
```
double smoothingOnlyMass
```
tokensPerTopic
```
int[] tokensPerTopic
```
topicBits
```
int topicBits
```
topicMask
```
int topicMask
```
typeTopicCounts
```
int[][] typeTopicCounts
```

Class cc.mallet.topics.WeightedTopicModel extends java.lang.Object implements Serializable

Serialized Fields

alpha
```
double alpha
```
alphabet
```
Alphabet alphabet
```
alphaSum
```
double alphaSum
```
beta
```
double beta
```
betaSum
```
double betaSum
```

data

java.util.ArrayList<TopicAssignment> data

formatter
```
java.text.NumberFormat formatter
```
logCountRatioCache
```
double[] logCountRatioCache
```
logTypeTopicWeights
```
double[][] logTypeTopicWeights
```
numTopics
```
int numTopics
```
numTypes
```
int numTypes
```
oneDocTopicCounts
```
int[] oneDocTopicCounts
```
printLogLikelihood
```
boolean printLogLikelihood
```
random
```
Randoms random
```
showTopicsInterval
```
int showTopicsInterval
```
tokensPerTopic
```
int[] tokensPerTopic
```
topicAlphabet
```
LabelAlphabet topicAlphabet
```
totalTopicWeights
```
double[] totalTopicWeights
```
typeTopicCounts
```
int[][] typeTopicCounts
```
typeTopicWeights
```
double[][] typeTopicWeights
```

typeTypeWeights

com.carrotsearch.hppc.IntDoubleHashMap[] typeTypeWeights

wordsPerTopic
```
int wordsPerTopic
```

Package cc.mallet.topics.tui
- Class cc.mallet.topics.tui.DMRLoader extends java.lang.Object implements Serializable
  
  serialVersionUID:
  
  1L
Package cc.mallet.types
- Class cc.mallet.types.Alphabet extends java.lang.Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - readResolve
      
      public java.lang.Object readResolve() throws java.io.ObjectStreamException
      
      This gets called after readObject; it lets the object decide whether to return itself or return a previously read in version. We use a hashMap of instanceIds to determine if we have already read in this object.
      
      Throws:
      
      java.io.ObjectStreamException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - entries
      
      java.util.ArrayList entries
    - entryClass
      
      java.lang.Class entryClass
    - growthStopped
      
      boolean growthStopped
    - instanceId
      
      java.util.UUID instanceId
    - map
      
      com.carrotsearch.hppc.ObjectIntHashMap map
- Class cc.mallet.types.ArrayListSequence extends java.util.ArrayList<E> implements Serializable
  
  serialVersionUID:
  
  1L
- Class cc.mallet.types.AugmentableFeatureVector extends FeatureVector implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - maxSortedIndex
      
      int maxSortedIndex
    - size
      
      int size
- Class cc.mallet.types.BiNormalSeparation extends RankedFeatureVector implements Serializable
- Class cc.mallet.types.CrossValidationIterator extends java.lang.Object implements Serializable
  
  serialVersionUID:
  
  234516468015114991L
  - Serialized Fields
    - folds
      
      InstanceList[] folds
    - index
      
      int index
    - nfolds
      
      int nfolds
- Class cc.mallet.types.DenseMatrix extends java.lang.Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - hasInfinite
      
      boolean hasInfinite
    - values
      
      double[] values
- Class cc.mallet.types.DenseVector extends DenseMatrix implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
- Class cc.mallet.types.ExpGain extends RankedFeatureVector implements Serializable
  - Serialized Fields
    - hyperbolicSharpness
      
      double hyperbolicSharpness
    - hyperbolicSlope
      
      double hyperbolicSlope
    - usingHyperbolicPrior
      
      boolean usingHyperbolicPrior
- Class cc.mallet.types.FeatureConjunction extends java.lang.Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - dictionary
      
      Alphabet dictionary
    - features
      
      int[] features
    - index
      
      int index
    - name
      
      java.lang.String name
    - negations
      
      boolean[] negations
- Class cc.mallet.types.FeatureConjunction.List extends java.lang.Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - conjunctions
      
      java.util.ArrayList conjunctions
- Class cc.mallet.types.FeatureCounts extends RankedFeatureVector implements Serializable
- Class cc.mallet.types.FeatureInducer extends java.lang.Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - beam1
      
      int beam1
    - beam2
      
      int beam2
    - fcl
      
      FeatureConjunction.List fcl
    - perLabelRanker
      
      RankedFeatureVector.PerLabelFactory perLabelRanker
    - ranker
      
      RankedFeatureVector.Factory ranker
- Class cc.mallet.types.FeatureSelection extends java.lang.Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - dictionary
      
      Alphabet dictionary
    - selectedFeatures
      
      java.util.BitSet selectedFeatures
- Class cc.mallet.types.FeatureSequence extends java.lang.Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - dictionary
      
      Alphabet dictionary
    - features
      
      int[] features
    - length
      
      int length
- Class cc.mallet.types.FeatureSequenceWithBigrams extends FeatureSequence implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - biDictionary
      
      Alphabet biDictionary
    - biFeatures
      
      int[] biFeatures
- Class cc.mallet.types.FeatureVector extends SparseVector implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - dictionary
      
      Alphabet dictionary
- Class cc.mallet.types.FeatureVectorSequence extends java.lang.Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - alphabet
      
      Alphabet alphabet
    - sequence
      
      FeatureVector[] sequence
- Class cc.mallet.types.GainRatio extends RankedFeatureVector implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - m_baseEntropy
      
      double m_baseEntropy
    - m_baseLabelDistribution
      
      LabelVector m_baseLabelDistribution
    - m_minNumInsts
      
      int m_minNumInsts
    - m_numSplitPointsForBestFeature
      
      int m_numSplitPointsForBestFeature
    - m_splitPoints
      
      double[] m_splitPoints
- Class cc.mallet.types.GradientGain extends RankedFeatureVector implements Serializable
- Class cc.mallet.types.HashedSparseVector extends SparseVector implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - index2location
      
      com.carrotsearch.hppc.IntIntHashMap index2location
    - maxIndex
      
      int maxIndex
- Class cc.mallet.types.IndexedSparseVector extends SparseVector implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
- Class cc.mallet.types.InfoGain extends RankedFeatureVector implements Serializable
  - Serialized Fields
    - baseEntropy
      
      double baseEntropy
    - baseLabelDistribution
      
      LabelVector baseLabelDistribution
- Class cc.mallet.types.Instance extends java.lang.Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - data
      
      java.lang.Object data
    - locked
      
      boolean locked
    - name
      
      java.lang.Object name
    - properties
      
      PropertyList properties
    - source
      
      java.lang.Object source
    - target
      
      java.lang.Object target
- Class cc.mallet.types.InstanceList extends java.util.ArrayList<Instance> implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - dataAlphabet
      
      Alphabet dataAlphabet
    - dataClass
      
      java.lang.Class dataClass
    - featureSelection
      
      FeatureSelection featureSelection
    - instWeights
      
      java.util.HashMap<Instance,java.lang.Double> instWeights
    - perLabelFeatureSelection
      
      FeatureSelection[] perLabelFeatureSelection
    - pipe
      
      Pipe pipe
    - targetAlphabet
      
      Alphabet targetAlphabet
    - targetClass
      
      java.lang.Class targetClass
- Class cc.mallet.types.InstanceList.CrossValidationIterator extends java.lang.Object implements Serializable
  - Serialized Fields
    - folds
      
      InstanceList[] folds
    - index
      
      int index
    - nfolds
      
      int nfolds
- Class cc.mallet.types.InstanceList.StratifiedCrossValidationIterator extends InstanceList.CrossValidationIterator implements Serializable
- Class cc.mallet.types.KLGain extends RankedFeatureVector implements Serializable
- Class cc.mallet.types.Label extends java.lang.Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - dictionary
      
      LabelAlphabet dictionary
    - entry
      
      java.lang.Object entry
    - index
      
      int index
- Class cc.mallet.types.LabelAlphabet extends Alphabet implements Serializable
  - Serialized Fields
    - labels
      
      java.util.ArrayList labels
- Class cc.mallet.types.Labels extends java.lang.Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - labels
      
      Label[] labels
- Class cc.mallet.types.LabelSequence extends FeatureSequence implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
- Class cc.mallet.types.LabelsSequence extends java.lang.Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - seq
      
      Labels[] seq
- Class cc.mallet.types.LabelVector extends RankedFeatureVector implements Serializable
- Class cc.mallet.types.Matrixn extends DenseMatrix implements Serializable
  
  serialVersionUID:
  
  7963668115823191655L
  - Serialized Fields
    - numDimensions
      
      int numDimensions
    - sizes
      
      int[] sizes
- Class cc.mallet.types.MultiInstanceList extends InstanceList implements Serializable
  
  serialVersionUID:
  
  -7177121200386974657L
  - Serialized Fields
    - lists
      
      InstanceList[] lists
    - offsets
      
      int[] offsets
- Class cc.mallet.types.Multinomial extends FeatureVector implements Serializable
  
  serialVersionUID:
  
  1L
- Class cc.mallet.types.Multinomial.Estimator extends java.lang.Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - counts
      
      double[] counts
    - dictionary
      
      Alphabet dictionary
    - size
      
      int size
- Class cc.mallet.types.Multinomial.LaplaceEstimator extends Multinomial.MEstimator implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
- Class cc.mallet.types.Multinomial.Logged extends Multinomial implements Serializable
  
  serialVersionUID:
  
  1L
- Class cc.mallet.types.Multinomial.MAPEstimator extends Multinomial.Estimator implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - prior
      
      Dirichlet prior
- Class cc.mallet.types.Multinomial.MEstimator extends Multinomial.Estimator implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - m
      
      double m
- Class cc.mallet.types.Multinomial.MLEstimator extends Multinomial.MEstimator implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
- Class cc.mallet.types.PagedInstanceList extends InstanceList implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - collectGarbage
      
      boolean collectGarbage
      
      recommend garbage collection after every swap out?
    - dirty
      
      java.util.BitSet dirty
      
      dirty.get(i) == true if in-memory bin i is dirty
    - id
      
      java.util.UUID id
      
      uniquely identifies this InstanceList. Used in creating serialized page name for swap files.
    - inMemoryPageIds
      
      int[] inMemoryPageIds
      
      array of page numbers that represent the in-memory pages
    - inMemoryPages
      
      InstanceList[] inMemoryPages
      
      array of instance lists that represent the in-memory pages
    - instancesPerPage
      
      int instancesPerPage
      
      number of instances to put in one page
    - noopPipe
      
      Pipe noopPipe
      
      Avoids creating a new noop pipe for each page
    - size
      
      int size
      
      Total number of instances in list, including those swapped out
    - swapDir
      
      java.io.File swapDir
      
      directory to store swap files
    - swapIns
      
      int swapIns
      
      Total number of swap-ins
    - swapInTime
      
      long swapInTime
      
      Total time spent in swap-ins
    - swapOuts
      
      int swapOuts
      
      Total number of swap-outs
    - swapOutTime
      
      long swapOutTime
      
      Total time spent in swap-ins
- Class cc.mallet.types.PartiallyRankedFeatureVector extends RankedFeatureVector implements Serializable
  - Serialized Fields
    - numRanked
      
      int numRanked
- Class cc.mallet.types.RankedFeatureVector extends FeatureVector implements Serializable
  - Serialized Fields
    - rankOrder
      
      int[] rankOrder
    - sortedTo
      
      int sortedTo
- Class cc.mallet.types.ROCData extends java.lang.Object implements Serializable
  
  serialVersionUID:
  
  -2060194953037720640L
  - Serialized Fields
    - counts
      
      int[][][] counts
      
      Matrix of class, threshold, [tp, fp, fn, tn]
    - labelAlphabet
      
      LabelAlphabet labelAlphabet
    - thresholds
      
      double[] thresholds
- Class cc.mallet.types.SparseMatrixn extends java.lang.Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - numDimensions
      
      int numDimensions
    - singleSize
      
      int singleSize
    - sizes
      
      int[] sizes
    - values
      
      SparseVector values
- Class cc.mallet.types.SparseVector extends java.lang.Object implements Serializable
  
  serialVersionUID:
  
  2L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - hasInfinite
      
      boolean hasInfinite
    - indices
      
      int[] indices
      
      If the vector is sparse, then both indices and values are sparse. Indices into these arrays are called ``locations'' in the below. The indices[] array maps locations to indices of the (virtual) dense array that's being represented. value[] maps locations to values.
    - values
      
      double[] values
- Class cc.mallet.types.StringEditFeatureVectorSequence extends FeatureVectorSequence implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - block1Indices
      
      int[] block1Indices
    - block2Indices
      
      int[] block2Indices
    - delim
      
      char delim
    - lexicon
      
      com.carrotsearch.hppc.ObjectIntHashMap lexicon
    - string1
      
      java.lang.String string1
    - string1Blocks
      
      java.lang.String[] string1Blocks
    - string1Length
      
      int string1Length
    - string1Present
      
      com.carrotsearch.hppc.ObjectIntHashMap string1Present
    - string2
      
      java.lang.String string2
    - string2Blocks
      
      java.lang.String[] string2Blocks
    - string2Length
      
      int string2Length
    - string2Present
      
      com.carrotsearch.hppc.ObjectIntHashMap string2Present
- Class cc.mallet.types.StringEditVector extends java.lang.Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - _delimiter
      
      java.lang.String _delimiter
    - _match
      
      int _match
    - _string1
      
      java.lang.String _string1
    - _string2
      
      java.lang.String _string2
- Class cc.mallet.types.StringKernel extends java.util.LinkedHashMap implements Serializable
  - Serialized Fields
    - cache
      
      boolean cache
    - lambda
      
      double lambda
    - n
      
      int n
    - normalizeCase
      
      boolean normalizeCase
- Class cc.mallet.types.Token extends java.lang.Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - features
      
      PropertyList features
    - properties
      
      PropertyList properties
    - text
      
      java.lang.String text
- Class cc.mallet.types.TokenSequence extends java.util.ArrayList<Token> implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - properties
      
      PropertyList properties
Package cc.mallet.util
- Class cc.mallet.util.CharSequenceLexer extends java.lang.Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - input
      
      java.lang.CharSequence input
    - matcher
      
      java.util.regex.Matcher matcher
    - matchText
      
      java.lang.String matchText
    - matchTextFresh
      
      boolean matchTextFresh
    - regex
      
      java.util.regex.Pattern regex
- Class cc.mallet.util.DoubleList extends java.lang.Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - data
      
      double[] data
    - size
      
      int size
- Class cc.mallet.util.ProgressMessageLogRecord extends java.util.logging.LogRecord implements Serializable
- Class cc.mallet.util.PropertyList extends java.lang.Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - key
      
      java.lang.String key
    - next
      
      PropertyList next
- Class cc.mallet.util.PropertyList.Iterator extends java.lang.Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - deletedKeys
      
      java.util.HashSet deletedKeys
    - nextCalled
      
      boolean nextCalled
    - nextProperty
      
      PropertyList nextProperty
    - property
      
      PropertyList property
    - returnNumeric
      
      boolean returnNumeric
    - returnObject
      
      boolean returnObject
- Class cc.mallet.util.PropertyList.NumericIterator extends PropertyList.Iterator implements Serializable
- Class cc.mallet.util.PropertyList.ObjectIterator extends PropertyList.Iterator implements Serializable
- Class cc.mallet.util.Randoms extends java.util.Random implements Serializable
  - Serialized Fields
    - haveNextGaussian
      
      boolean haveNextGaussian
    - nextGaussian
      
      double nextGaussian
- Class cc.mallet.util.Replacement extends java.lang.Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
      
      private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
      
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
      
      private void writeObject(java.io.ObjectOutputStream out) throws java.io.IOException
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - target
      
      java.lang.String target
    - tokens
      
      java.lang.String[] tokens

Serialized Form

Package cc.mallet.classify

Class cc.mallet.classify.AdaBoost extends Classifier implements Serializable

Serialized Fields

alphas

weakClassifiers

Class cc.mallet.classify.AdaBoostM2 extends Classifier implements Serializable

Serialized Fields

alphas

weakClassifiers

Class cc.mallet.classify.BaggingClassifier extends Classifier implements Serializable

Serialized Fields

baggedClassifiers

weights

Class cc.mallet.classify.BalancedWinnow extends Classifier implements Serializable

Serialization Methods

readObject

writeObject

Serialized Fields

m_weights

Class cc.mallet.classify.BalancedWinnowTrainer extends ClassifierTrainer<BalancedWinnow> implements Serializable

Serialized Fields

classifier

m_coolingRate

m_delta

m_epsilon

m_maxIterations

m_weights

Class cc.mallet.classify.C45 extends Classifier implements Serializable

Serialization Methods

readObject

writeObject

Serialized Fields

m_root

Class cc.mallet.classify.C45.Node extends java.lang.Object implements Serializable

Serialized Fields

m_dataDict

m_gainRatio

m_ilist

m_instIndices

m_leftChild

m_minNumInsts

m_parent

m_rightChild

Class cc.mallet.classify.Classification extends java.lang.Object implements Serializable

Serialized Fields

classifier

instance

labeling

Class cc.mallet.classify.Classifier extends java.lang.Object implements Serializable

Serialized Fields

instancePipe

Class cc.mallet.classify.ClassifierEnsemble extends Classifier implements Serializable

Serialized Fields

ensemble

weights

Class cc.mallet.classify.ConfidencePredictingClassifier extends Classifier implements Serializable

Serialized Fields

confidencePredictingClassifier

numConfidenceCorrect

numCorrectInstances

numFalseNegative

numFalsePositive

numIncorrectInstances

totalCorrect

totalIncorrect

totalIncorrectCorrect

totalIncorrectIncorrect

underlyingClassifier

Class cc.mallet.classify.DecisionTree extends Classifier implements Serializable

Serialized Fields

addFeaturesClassEntropyThreshold

root

Class cc.mallet.classify.DecisionTree.Node extends java.lang.Object implements Serializable

Serialized Fields

child0

child1

dictionary

featureIndex

ilist